Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   G7083_RS10425 Genome accession   NZ_CP049913
Coordinates   2172414..2172725 (+) Length   103 a.a.
NCBI ID   WP_166014709.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2167414..2177725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS10410 (G7083_10410) lon 2167449..2169818 (+) 2370 WP_166014706.1 endopeptidase La -
  G7083_RS10415 (G7083_10415) - 2169992..2170264 (+) 273 WP_166014707.1 HU family DNA-binding protein -
  G7083_RS10420 (G7083_10420) ppiD 2170418..2172277 (+) 1860 WP_166014708.1 peptidylprolyl isomerase -
  G7083_RS10425 (G7083_10425) comEA 2172414..2172725 (+) 312 WP_166014709.1 ComEA family DNA-binding protein Machinery gene
  G7083_RS10430 (G7083_10430) cmk 2172945..2173622 (+) 678 WP_166014710.1 (d)CMP kinase -
  G7083_RS10435 (G7083_10435) rpsA 2173731..2175401 (+) 1671 WP_166014711.1 30S ribosomal protein S1 -
  G7083_RS10440 (G7083_10440) ihfB 2175658..2175936 (+) 279 WP_166014712.1 integration host factor subunit beta -
  G7083_RS10445 (G7083_10445) - 2176079..2176363 (+) 285 WP_166014713.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  G7083_RS10450 (G7083_10450) lapB 2176374..2177543 (+) 1170 WP_166014714.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10901.77 Da        Isoelectric Point: 4.9631

>NTDB_id=428618 G7083_RS10425 WP_166014709.1 2172414..2172725(+) (comEA) [Vibrio sp. HDW18]
MQFKTRMMTALLVLCLPAAPMLTCAQEATSVAPIEEGIVITVNINTASAEELATLLKGVGIKKAQAIVDYRQTNGPFASA
DDLTQVTGIGESIVRQNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=428618 G7083_RS10425 WP_166014709.1 2172414..2172725(+) (comEA) [Vibrio sp. HDW18]
ATGCAATTCAAAACTAGAATGATGACGGCCTTGCTTGTACTGTGTTTACCTGCCGCTCCGATGTTGACTTGTGCACAAGA
GGCGACATCGGTTGCACCGATCGAAGAAGGAATAGTGATCACGGTAAATATTAATACCGCATCAGCAGAAGAGCTGGCTA
CTTTACTGAAAGGGGTTGGTATTAAGAAAGCACAAGCGATTGTGGATTATCGACAAACCAATGGCCCGTTTGCGAGTGCT
GATGATCTTACCCAAGTGACTGGAATTGGAGAGTCTATCGTGCGCCAAAATGCAGCAAGAATTTTGCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

69.903

100

0.699
  comEA Vibrio cholerae strain A1552

69.903

100

0.699
  comEA Vibrio parahaemolyticus RIMD 2210633

58.333

93.204

0.544
  comEA Vibrio campbellii strain DS40M4

55.67

94.175

0.524