Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IF695_RS01910 Genome accession   NZ_CP062393
Coordinates   356598..357200 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain NAS_AN_009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 351598..362200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF695_RS01870 (IF695_01895) - 351681..351800 (+) 120 WP_000840602.1 hypothetical protein -
  IF695_RS01875 (IF695_01900) mreC 352000..352842 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  IF695_RS01880 (IF695_01905) mreD 352842..353372 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  IF695_RS01885 (IF695_01910) rplU 353539..353847 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  IF695_RS01890 (IF695_01915) - 353853..354173 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  IF695_RS01895 (IF695_01920) rpmA 354185..354469 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  IF695_RS01900 (IF695_01925) obgE 354824..356116 (+) 1293 WP_000496100.1 GTPase ObgE -
  IF695_RS01905 (IF695_01930) - 356129..356584 (+) 456 WP_000368902.1 ACT domain-containing protein -
  IF695_RS01910 (IF695_01935) ruvA 356598..357200 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  IF695_RS01915 (IF695_01940) ruvB 357232..358236 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IF695_RS01920 (IF695_01945) queA 358238..359263 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IF695_RS01925 (IF695_01950) tgt 359286..360425 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  IF695_RS01930 (IF695_01955) yajC 360444..360704 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=428614 IF695_RS01910 WP_000271547.1 356598..357200(+) (ruvA) [Staphylococcus aureus strain NAS_AN_009]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=428614 IF695_RS01910 WP_000271547.1 356598..357200(+) (ruvA) [Staphylococcus aureus strain NAS_AN_009]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425