Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   G7083_RS10100 Genome accession   NZ_CP049913
Coordinates   2098953..2100353 (+) Length   466 a.a.
NCBI ID   WP_166015037.1    Uniprot ID   A0A6G8D6W2
Organism   Vibrio sp. HDW18     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2093953..2105353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS10095 (G7083_10095) uvrB 2096790..2098820 (+) 2031 WP_166014651.1 excinuclease ABC subunit UvrB -
  G7083_RS10100 (G7083_10100) luxO 2098953..2100353 (+) 1401 WP_166015037.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  G7083_RS10105 (G7083_10105) luxU 2100357..2100698 (+) 342 WP_166015038.1 quorum-sensing phosphorelay protein LuxU -
  G7083_RS10110 (G7083_10110) - 2100681..2101577 (-) 897 WP_166014652.1 YvcK family protein -
  G7083_RS10115 (G7083_10115) moaA 2101881..2102870 (+) 990 WP_166014653.1 GTP 3',8-cyclase MoaA -
  G7083_RS10120 (G7083_10120) moaB 2102930..2103442 (+) 513 WP_166014654.1 molybdenum cofactor biosynthesis protein B -
  G7083_RS10125 (G7083_10125) moaC 2103452..2103931 (+) 480 WP_166014655.1 cyclic pyranopterin monophosphate synthase MoaC -
  G7083_RS10130 (G7083_10130) moaD 2103928..2104173 (+) 246 WP_166014656.1 molybdopterin synthase sulfur carrier subunit -
  G7083_RS10135 (G7083_10135) moaE 2104175..2104651 (+) 477 WP_166014657.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51799.43 Da        Isoelectric Point: 6.6601

>NTDB_id=428615 G7083_RS10100 WP_166015037.1 2098953..2100353(+) (luxO) [Vibrio sp. HDW18]
MVEDTASIAALYRSFLAPLKIDINIVGTGRDAIASIAHREPDLILLDLRLPDMTGMDVLHAVKQKAPEVPIVFMTAHGSI
DSAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDLDNKNHTYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGEKPFIAINCAAIPKDLIESELFGHVKGAFTGAASERQGAAEAADGGTLFLDELCEMDLEL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQAGRFREDLYYRLYVIPLHLPSLRERGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRRYEWPGNVRQLQNVLRNVVVLNEGCEITLNMLPPPLNHPSVPLLREEIKLDQQHVISVH
EIFPLWITEKQAIEQAIAACGGNIPRAASYLAVSPSTIYRKLQTWNEQATEKVTAKEKVTAKEQER

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=428615 G7083_RS10100 WP_166015037.1 2098953..2100353(+) (luxO) [Vibrio sp. HDW18]
ATGGTCGAAGATACCGCGTCGATTGCGGCTCTGTATCGCTCTTTTCTCGCGCCGCTCAAAATTGATATCAATATCGTCGG
AACAGGGCGTGACGCGATTGCGAGCATTGCACACCGCGAGCCTGACTTGATTCTGCTTGATTTACGTCTACCGGATATGA
CTGGCATGGATGTGTTGCATGCGGTCAAGCAAAAGGCACCCGAAGTGCCCATCGTGTTTATGACCGCGCATGGTTCGATT
GACAGCGCGGTGGAAGCGATGCGCTACGGTGCGCAAGATTTTTTGATCAAACCTTGTGAAGCGGATCGCTTGCGGGTCAC
GGTCAATAACGCGATTCGTAAAGCATCAAAGCTCAAAAACGATCTCGATAACAAAAACCATACTTATCAAGGTTTTATTG
GTAGTAGCCAAACTATGCAAGCGGTGTATCGCACGATTGATTCCGCCGCGAGCAGTAAAGCCAGTATTTTCATTACCGGT
GAAAGTGGTACCGGTAAAGAGGTGTGTGCGGAAGCCATTCATGCTGCCAGTAAACGAGGTGAAAAACCGTTTATCGCGAT
TAACTGTGCTGCGATCCCGAAAGATTTGATTGAAAGTGAGCTATTTGGTCACGTAAAAGGCGCGTTCACTGGAGCGGCCA
GCGAACGGCAAGGTGCCGCGGAAGCAGCTGATGGTGGTACGCTGTTTTTGGATGAGCTGTGTGAAATGGATTTAGAGTTG
CAGACCAAATTACTGCGCTTTATTCAAACTGGCACATTCCAAAAAGTTGGCTCGTCAAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGCGCCACCAATCGCGACCCTTGGAAAGAAGTGCAAGCTGGGCGTTTTCGCGAAGACTTATACTACCGTTTGT
ACGTGATCCCGCTGCATTTGCCCTCACTGCGTGAGCGTGGTGATGATGTGATTGAGATTGCCTACTCTTTGTTGGGGTTT
ATGTCCAAAGAGGAAGGCAAAGATTTTGTGCGCTTGTCAGCTGAAGTGGTGGAGCGTTTTCGTCGCTACGAATGGCCAGG
TAATGTGCGCCAATTACAAAACGTATTGCGCAATGTGGTGGTGCTGAATGAGGGATGTGAAATAACCCTTAATATGTTGC
CTCCTCCGCTTAATCACCCTTCGGTACCGCTTTTACGTGAAGAAATTAAACTAGATCAACAGCATGTGATCTCAGTACAT
GAAATTTTTCCGTTATGGATCACGGAAAAACAAGCGATTGAGCAAGCGATTGCCGCTTGTGGTGGTAATATTCCGCGCGC
CGCCAGTTATTTAGCCGTCAGCCCATCGACCATTTATCGTAAGCTGCAAACTTGGAATGAACAAGCGACAGAGAAAGTCA
CAGCAAAAGAGAAAGTTACCGCAAAAGAGCAGGAGCGCTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(405-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D6W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.91

95.708

0.861