Detailed information NTG0428613

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: IF695_RS01850
• Genome accession: NZ_CP062393
• Coordinates: 349622..350308 (+)
• Length: 228 a.a.
• NCBI ID: WP_240025932.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NAS_AN_009
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 344622..355308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF695_RS01835 (IF695_01860)	-	344734..347364 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
IF695_RS01840 (IF695_01865)	-	347377..348648 (+)	1272	WP_240025928.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
IF695_RS01845 (IF695_01870)	-	348918..349625 (+)	708	WP_000261115.1	A24 family peptidase	-
IF695_RS01850 (IF695_01875)	ysxA/radC	349622..350308 (+)	687	WP_240025932.1	DNA repair protein RadC	Machinery gene
IF695_RS01855 (IF695_01880)	-	350376..350660 (+)	285	WP_000171859.1	hypothetical protein	-
IF695_RS01860 (IF695_01885)	-	350777..350974 (-)	198	WP_000025835.1	hypothetical protein	-
IF695_RS01865 (IF695_01890)	-	351134..351607 (+)	474	WP_001236735.1	DUF4930 family protein	-
IF695_RS01870 (IF695_01895)	-	351681..351800 (+)	120	WP_000840602.1	hypothetical protein	-
IF695_RS01875 (IF695_01900)	mreC	352000..352842 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IF695_RS01880 (IF695_01905)	mreD	352842..353372 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
IF695_RS01885 (IF695_01910)	rplU	353539..353847 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IF695_RS01890 (IF695_01915)	-	353853..354173 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IF695_RS01895 (IF695_01920)	rpmA	354185..354469 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25325.31 Da
• Isoelectric Point: 7.0539

>NTDB_id=428613 IF695_RS01850 WP_240025932.1 349622..350308(+) (ysxA/radC) [Staphylococcus aureus strain NAS_AN_009]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNLVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=428613 IF695_RS01850 WP_240025932.1 349622..350308(+) (ysxA/radC) [Staphylococcus aureus strain NAS_AN_009]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATTTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377