Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G7083_RS08500 Genome accession   NZ_CP049913
Coordinates   1740725..1741597 (-) Length   290 a.a.
NCBI ID   WP_166014379.1    Uniprot ID   A0A6G8D4C1
Organism   Vibrio sp. HDW18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735725..1746597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS08480 (G7083_08480) parC 1736722..1739007 (+) 2286 WP_166014375.1 DNA topoisomerase IV subunit A -
  G7083_RS08485 (G7083_08485) yacG 1739066..1739263 (-) 198 WP_166014376.1 DNA gyrase inhibitor YacG -
  G7083_RS08490 (G7083_08490) zapD 1739348..1740088 (-) 741 WP_166014377.1 cell division protein ZapD -
  G7083_RS08495 (G7083_08495) coaE 1740120..1740728 (-) 609 WP_166014378.1 dephospho-CoA kinase -
  G7083_RS08500 (G7083_08500) pilD 1740725..1741597 (-) 873 WP_166014379.1 A24 family peptidase Machinery gene
  G7083_RS08505 (G7083_08505) pilC 1741652..1742878 (-) 1227 WP_166014380.1 type II secretion system F family protein Machinery gene
  G7083_RS08510 (G7083_08510) pilB 1742913..1744601 (-) 1689 WP_166014381.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G7083_RS08515 (G7083_08515) - 1744602..1745066 (-) 465 WP_166015021.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G7083_RS08520 (G7083_08520) nadC 1745286..1746185 (-) 900 WP_166014382.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32101.29 Da        Isoelectric Point: 6.4385

>NTDB_id=428610 G7083_RS08500 WP_166014379.1 1740725..1741597(-) (pilD) [Vibrio sp. HDW18]
MELFDYYPWLFPLLVSLFGLIIGSFLNVVIYRLPKIMEREWRAECAASFPEYAISPPDGVLTLSVPRSTCPHCNTPIRVI
DNIPLLSWLWLRGKCSHCQAPISARYPLIELLSSVVSGLIASQFPFGIYAVALLFFSYVLIAATFIDLDTMLLPDQLTLP
LLWGGIALALLGFSPVSLRDAVIGAMAGYLCLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPVIVLLSSLVGI
VFGLIQLRLQRQGIDKAFPFGPYLAIAGGLALLYGESIIAWYFSTWVGPL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=428610 G7083_RS08500 WP_166014379.1 1740725..1741597(-) (pilD) [Vibrio sp. HDW18]
ATGGAACTGTTTGATTACTACCCGTGGCTATTTCCGCTATTGGTTAGCTTATTTGGCCTGATCATCGGTAGCTTTCTGAA
TGTGGTGATTTACCGCTTACCGAAAATAATGGAACGCGAATGGCGCGCTGAGTGTGCGGCAAGTTTTCCTGAATACGCGA
TTAGCCCGCCAGACGGTGTGCTCACCCTCAGTGTGCCGCGCTCCACTTGCCCACACTGCAATACCCCGATTCGAGTGATC
GATAATATCCCACTGCTCAGTTGGCTGTGGCTGCGCGGTAAGTGCTCACACTGCCAAGCACCGATCAGTGCTCGTTATCC
CTTGATTGAGCTATTGAGCTCGGTGGTCAGTGGCCTGATCGCCAGCCAATTTCCGTTTGGTATCTATGCCGTGGCGCTAC
TGTTTTTCAGCTATGTGCTGATTGCAGCAACGTTTATCGACCTCGATACCATGCTGCTGCCCGATCAACTGACCCTGCCG
TTACTGTGGGGTGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTTCGTGATGCGGTGATCGGCGCTATGGC
AGGCTATCTCTGTCTATGGTCAATTTACTGGCTGTTTAAATTACTGACCGGCAAAGAAGGCATGGGCTATGGCGATTTCA
AACTGCTGGCCGCCCTCGGCGCTTGGCTTGGCTGGCAACTATTGCCAGTGATCGTGCTGCTGTCGTCACTGGTTGGCATC
GTGTTTGGCTTAATCCAACTGCGCCTACAACGGCAAGGGATTGATAAAGCTTTCCCATTTGGGCCTTATTTGGCGATCGC
AGGTGGCTTGGCTCTGCTGTATGGTGAGTCGATCATCGCGTGGTACTTCTCCACTTGGGTTGGGCCATTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D4C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

84.375

99.31

0.838
  pilD Vibrio campbellii strain DS40M4

74.306

99.31

0.738
  pilD Acinetobacter nosocomialis M2

53.532

92.759

0.497
  pilD Acinetobacter baumannii D1279779

53.16

92.759

0.493
  pilD Neisseria gonorrhoeae MS11

45.985

94.483

0.434