Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   G7083_RS01080 Genome accession   NZ_CP049913
Coordinates   245937..246524 (-) Length   195 a.a.
NCBI ID   WP_166013179.1    Uniprot ID   A0A6G8D0I6
Organism   Vibrio sp. HDW18     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 240937..251524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS01060 (G7083_01060) - 241180..242445 (-) 1266 WP_166013175.1 DUF945 family protein -
  G7083_RS01065 (G7083_01065) - 242668..244614 (+) 1947 WP_166013176.1 ATP-binding protein -
  G7083_RS01070 (G7083_01070) - 244611..245108 (+) 498 WP_166013177.1 response regulator -
  G7083_RS01075 (G7083_01075) - 245309..245857 (+) 549 WP_166013178.1 hypothetical protein -
  G7083_RS01080 (G7083_01080) tfoX 245937..246524 (-) 588 WP_166013179.1 TfoX/Sxy family DNA transformation protein Regulator
  G7083_RS01085 (G7083_01085) - 246911..247831 (+) 921 WP_166013180.1 HDOD domain-containing protein -
  G7083_RS01090 (G7083_01090) - 247849..248754 (+) 906 WP_166013181.1 lysine exporter LysO family protein -
  G7083_RS01095 (G7083_01095) panP 248919..250565 (+) 1647 WP_166013182.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22923.35 Da        Isoelectric Point: 7.7609

>NTDB_id=428584 G7083_RS01080 WP_166013179.1 245937..246524(-) (tfoX) [Vibrio sp. HDW18]
MNEQQFLNYITKFGAYQRRSMFGGIGLFQHDAMYVLVSEERIFIRGCEELDPELIDLGCEKYRHVKKQTTATVNYYDITD
LYEQNYPELDSIIERSIQFSVVQREFQRSVASRRLRDLPNMQLTLERMVKKAGIDDVETFIKLGAPAVFNKVRQAYGSDV
DVKLLWKFAGAIESIHWKLLQEPRKRQLLESCQLR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=428584 G7083_RS01080 WP_166013179.1 245937..246524(-) (tfoX) [Vibrio sp. HDW18]
ATGAATGAGCAACAGTTTTTAAATTACATAACTAAGTTTGGTGCATATCAAAGACGTTCGATGTTTGGTGGTATTGGATT
ATTTCAGCACGATGCGATGTACGTGTTGGTCAGTGAAGAACGTATTTTTATCCGTGGTTGCGAGGAGTTAGACCCAGAAC
TGATTGATTTAGGTTGTGAAAAATATCGCCATGTCAAAAAACAGACTACGGCGACGGTGAATTATTATGATATTACCGAT
CTCTATGAGCAAAATTACCCAGAGTTAGATTCGATCATCGAGCGCTCTATTCAATTTTCGGTGGTCCAGCGTGAGTTTCA
ACGTTCAGTCGCTAGCCGCCGGCTACGTGATTTACCCAATATGCAACTCACCTTAGAACGTATGGTAAAAAAAGCCGGTA
TCGATGATGTTGAAACCTTTATCAAGTTAGGTGCACCAGCGGTGTTTAATAAAGTGCGCCAGGCTTATGGCAGTGATGTT
GATGTGAAGTTGTTGTGGAAGTTTGCCGGTGCGATTGAGAGTATTCATTGGAAATTGCTGCAAGAGCCACGTAAGCGTCA
GTTGTTGGAAAGTTGCCAGCTACGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D0I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

90.256

100

0.903
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

90.256

100

0.903
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

90.256

100

0.903
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

90.256

100

0.903
  tfoX Vibrio cholerae strain A1552

90.256

100

0.903
  tfoX Vibrio campbellii strain DS40M4

65.803

98.974

0.651
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.285

98.974

0.646
  tfoX Aliivibrio fischeri ES114

55.851

96.41

0.538