Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7047_RS25750 Genome accession   NZ_CP049910
Coordinates   5642198..5642779 (-) Length   193 a.a.
NCBI ID   WP_166311165.1    Uniprot ID   A0A6G8CW32
Organism   Diaphorobacter sp. HDW4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5626160..5642779 5642198..5642779 within 0


Gene organization within MGE regions


Location: 5626160..5642779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7047_RS25715 (G7047_25720) - 5627574..5633972 (+) 6399 WP_166311160.1 DEAD/DEAH box helicase -
  G7047_RS25720 (G7047_25725) - 5633977..5636094 (+) 2118 WP_166311161.1 UvrD-helicase domain-containing protein -
  G7047_RS31575 (G7047_25730) - 5636266..5636658 (-) 393 WP_166311162.1 DUF3024 domain-containing protein -
  G7047_RS25730 (G7047_25735) - 5636867..5637301 (-) 435 WP_166311163.1 hypothetical protein -
  G7047_RS25735 (G7047_25740) - 5637298..5639298 (-) 2001 WP_166311164.1 integrase -
  G7047_RS25740 (G7047_25745) - 5639295..5640575 (-) 1281 WP_240939268.1 tyrosine-type recombinase/integrase -
  G7047_RS25745 (G7047_25750) - 5640807..5642063 (-) 1257 WP_240939269.1 site-specific integrase -
  G7047_RS25750 (G7047_25755) ssb 5642198..5642779 (-) 582 WP_166311165.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20535.58 Da        Isoelectric Point: 5.9554

>NTDB_id=428578 G7047_RS25750 WP_166311165.1 5642198..5642779(-) (ssb) [Diaphorobacter sp. HDW4A]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENRESTEWHRVVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDPQSGQERYATEIRADQMQMLGSRQGMGGGSGGGGGGYEDSGYGGGGNDGGYDAAPSPAPQRRAAPAPMAAR
PAPAPAPRPAPAPVQQAPRANSGFDDMDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=428578 G7047_RS25750 WP_166311165.1 5642198..5642779(-) (ssb) [Diaphorobacter sp. HDW4A]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGACGTGATCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTCGCCAATGTCACCATTGCCACCACAGACCGCTGGCGCGACAAGAACACCGGTGAAAACCGCGAATCCACCGAATGGC
ACCGAGTCGTCTTCAATGGCCGTTTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTACGTAGAAGGC
AGCCTTCGCACCCGCAAGTGGACCGATCCCCAGAGCGGCCAAGAACGCTACGCCACCGAAATCCGCGCTGACCAGATGCA
GATGCTGGGCAGCCGTCAGGGCATGGGCGGTGGTAGCGGCGGCGGTGGTGGCGGTTACGAAGACAGTGGCTACGGCGGTG
GCGGCAACGATGGTGGCTACGACGCGGCCCCCTCCCCAGCACCCCAGCGCCGTGCAGCCCCCGCTCCCATGGCGGCACGC
CCGGCTCCGGCCCCTGCGCCGCGTCCGGCCCCCGCACCGGTGCAACAGGCTCCGCGCGCGAATTCGGGCTTTGACGACAT
GGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8CW32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.332

100

0.523
  ssb Vibrio cholerae strain A1552

49.246

100

0.508
  ssb Neisseria gonorrhoeae MS11

45.596

100

0.456
  ssb Neisseria meningitidis MC58

45.078

100

0.451