Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7064_RS14035 Genome accession   NZ_CP049907
Coordinates   3294997..3295422 (-) Length   141 a.a.
NCBI ID   WP_133274194.1    Uniprot ID   -
Organism   Hymenobacter sp. HDW8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3289997..3300422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7064_RS14015 (G7064_14020) - 3290528..3291274 (-) 747 WP_166074069.1 hypothetical protein -
  G7064_RS14020 (G7064_14025) - 3291783..3292007 (+) 225 WP_166074071.1 hypothetical protein -
  G7064_RS14025 (G7064_14030) recG 3292070..3294166 (-) 2097 WP_166074072.1 ATP-dependent DNA helicase RecG -
  G7064_RS14030 (G7064_14035) gldD 3294239..3294868 (-) 630 WP_240935502.1 gliding motility lipoprotein GldD -
  G7064_RS14035 (G7064_14040) ssb 3294997..3295422 (-) 426 WP_133274194.1 single-stranded DNA-binding protein Machinery gene
  G7064_RS14040 (G7064_14045) mutY 3295517..3296608 (-) 1092 WP_240935503.1 A/G-specific adenine glycosylase -
  G7064_RS14045 (G7064_14050) - 3296808..3297113 (+) 306 WP_084443967.1 HU family DNA-binding protein -
  G7064_RS14050 (G7064_14055) - 3297197..3298114 (+) 918 WP_166074073.1 tetratricopeptide repeat protein -
  G7064_RS14055 (G7064_14060) - 3298515..3300122 (+) 1608 WP_165963667.1 ribonuclease E/G -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15963.86 Da        Isoelectric Point: 6.6487

>NTDB_id=428561 G7064_RS14035 WP_133274194.1 3294997..3295422(-) (ssb) [Hymenobacter sp. HDW8]
MSAGVNKVILVGNLGKDPEVRHLEGGVSVANFTLATNEYHKDKNGARIERTEWHNITAWRGLAEVAEKYLRKGHQVYIEG
RIRTRQYQDKDNQTRYITEIVADEMTMLGGKPHTDGTTTQAAPTPEAQTFRQEPELDQLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=428561 G7064_RS14035 WP_133274194.1 3294997..3295422(-) (ssb) [Hymenobacter sp. HDW8]
ATGTCAGCAGGAGTTAACAAAGTAATATTAGTTGGAAATCTGGGCAAAGACCCGGAAGTACGCCACTTAGAAGGCGGCGT
AAGCGTGGCCAATTTTACCTTAGCTACAAACGAGTATCACAAGGATAAAAACGGCGCCCGTATTGAGCGTACCGAGTGGC
ATAACATCACTGCTTGGCGTGGCTTGGCGGAGGTAGCGGAGAAGTATTTGCGCAAAGGCCACCAGGTATATATTGAAGGT
CGCATCCGGACGCGCCAGTATCAGGACAAAGACAATCAGACCCGCTACATCACCGAAATTGTGGCTGATGAAATGACTAT
GCTGGGTGGCAAGCCTCATACTGACGGAACTACTACTCAGGCTGCACCGACTCCGGAGGCTCAGACGTTCCGTCAGGAGC
CGGAACTCGACCAGTTGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.273

93.617

0.489
  ssb Neisseria meningitidis MC58

57.143

79.433

0.454
  ssb Neisseria gonorrhoeae MS11

57.143

79.433

0.454
  ssb Glaesserella parasuis strain SC1401

54.206

75.887

0.411