Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G7048_RS19125 | Genome accession | NZ_CP049905 |
| Coordinates | 4186042..4186539 (-) | Length | 165 a.a. |
| NCBI ID | WP_166069666.1 | Uniprot ID | A0A6G8C0D9 |
| Organism | Diaphorobacter sp. HDW4B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4184196..4226949 | 4186042..4186539 | within | 0 |
Gene organization within MGE regions
Location: 4184196..4226949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7048_RS19110 (G7048_19105) | - | 4184196..4184942 (-) | 747 | WP_166069663.1 | hypothetical protein | - |
| G7048_RS19115 (G7048_19110) | - | 4184942..4185526 (-) | 585 | WP_166069664.1 | hypothetical protein | - |
| G7048_RS19120 (G7048_19115) | - | 4185584..4186033 (-) | 450 | WP_166069665.1 | hypothetical protein | - |
| G7048_RS19125 (G7048_19120) | ssb | 4186042..4186539 (-) | 498 | WP_166069666.1 | single-stranded DNA-binding protein | Machinery gene |
| G7048_RS19130 (G7048_19125) | - | 4186585..4187250 (-) | 666 | WP_166069667.1 | hypothetical protein | - |
| G7048_RS19135 (G7048_19130) | - | 4187243..4188058 (-) | 816 | WP_166069668.1 | hypothetical protein | - |
| G7048_RS19140 (G7048_19135) | - | 4188070..4189134 (-) | 1065 | WP_166069669.1 | hypothetical protein | - |
| G7048_RS19145 (G7048_19140) | - | 4189131..4189427 (-) | 297 | WP_166069670.1 | hypothetical protein | - |
| G7048_RS19150 (G7048_19145) | - | 4189790..4189948 (-) | 159 | WP_166069671.1 | hypothetical protein | - |
| G7048_RS19155 (G7048_19150) | - | 4189945..4190196 (-) | 252 | WP_166069673.1 | hypothetical protein | - |
| G7048_RS19160 (G7048_19155) | - | 4190206..4190466 (-) | 261 | WP_166069674.1 | hypothetical protein | - |
| G7048_RS19165 (G7048_19160) | - | 4190573..4191181 (-) | 609 | WP_240933037.1 | DNA cytosine methyltransferase | - |
| G7048_RS19170 (G7048_19165) | - | 4191574..4191720 (-) | 147 | WP_166069675.1 | hypothetical protein | - |
| G7048_RS19175 (G7048_19170) | - | 4191772..4191975 (-) | 204 | WP_166069676.1 | hypothetical protein | - |
| G7048_RS19180 (G7048_19175) | - | 4192064..4192603 (-) | 540 | WP_166069677.1 | hypothetical protein | - |
| G7048_RS19185 (G7048_19180) | - | 4193330..4193557 (-) | 228 | WP_166069678.1 | hypothetical protein | - |
| G7048_RS19190 (G7048_19185) | - | 4193696..4194319 (-) | 624 | WP_166069679.1 | NYN domain-containing protein | - |
| G7048_RS19195 (G7048_19190) | - | 4194549..4195316 (-) | 768 | WP_166069680.1 | hypothetical protein | - |
| G7048_RS19200 (G7048_19195) | - | 4195335..4196012 (-) | 678 | WP_166069681.1 | S24 family peptidase | - |
| G7048_RS19205 (G7048_19200) | - | 4196075..4196302 (+) | 228 | WP_166069682.1 | helix-turn-helix transcriptional regulator | - |
| G7048_RS19210 (G7048_19205) | - | 4196295..4196681 (+) | 387 | WP_166069683.1 | hypothetical protein | - |
| G7048_RS19215 (G7048_19210) | - | 4196870..4197097 (+) | 228 | WP_166069684.1 | hypothetical protein | - |
| G7048_RS19220 (G7048_19215) | - | 4197124..4197336 (+) | 213 | WP_166069685.1 | hypothetical protein | - |
| G7048_RS19225 (G7048_19220) | - | 4197371..4197553 (+) | 183 | WP_166069686.1 | hypothetical protein | - |
| G7048_RS19230 (G7048_19225) | - | 4197753..4198043 (+) | 291 | WP_166069687.1 | hypothetical protein | - |
| G7048_RS19235 (G7048_19230) | - | 4198010..4198327 (-) | 318 | WP_166069688.1 | hypothetical protein | - |
| G7048_RS19240 (G7048_19235) | - | 4198661..4198981 (+) | 321 | WP_166069689.1 | hypothetical protein | - |
| G7048_RS19245 (G7048_19240) | - | 4198978..4200765 (+) | 1788 | WP_166069690.1 | toprim domain-containing protein | - |
| G7048_RS19250 (G7048_19245) | - | 4200756..4201292 (-) | 537 | WP_166069691.1 | hypothetical protein | - |
| G7048_RS19255 (G7048_19250) | - | 4201470..4201760 (+) | 291 | WP_166069692.1 | hypothetical protein | - |
| G7048_RS19260 (G7048_19255) | - | 4201757..4201909 (+) | 153 | WP_166069693.1 | hypothetical protein | - |
| G7048_RS19265 (G7048_19260) | - | 4201909..4202439 (+) | 531 | WP_166069694.1 | hypothetical protein | - |
| G7048_RS19270 (G7048_19265) | - | 4202701..4203270 (+) | 570 | WP_166069695.1 | recombination protein NinG | - |
| G7048_RS19275 (G7048_19270) | - | 4203267..4203734 (+) | 468 | WP_166069696.1 | hypothetical protein | - |
| G7048_RS19280 (G7048_19275) | - | 4203745..4204221 (+) | 477 | WP_166069697.1 | hypothetical protein | - |
| G7048_RS19285 (G7048_19280) | - | 4204243..4204875 (+) | 633 | WP_166069698.1 | hypothetical protein | - |
| G7048_RS19300 (G7048_19295) | - | 4205489..4205755 (-) | 267 | WP_166069699.1 | helix-turn-helix domain-containing protein | - |
| G7048_RS19305 (G7048_19300) | - | 4205905..4206105 (+) | 201 | WP_166071065.1 | HNH endonuclease | - |
| G7048_RS19310 (G7048_19305) | - | 4206108..4206326 (+) | 219 | WP_166069700.1 | hypothetical protein | - |
| G7048_RS19315 (G7048_19310) | - | 4206475..4206789 (+) | 315 | WP_166069701.1 | hypothetical protein | - |
| G7048_RS19320 (G7048_19315) | - | 4206801..4208498 (+) | 1698 | WP_166069702.1 | terminase large subunit | - |
| G7048_RS19325 (G7048_19320) | - | 4208508..4209746 (+) | 1239 | WP_166066873.1 | phage portal protein | - |
| G7048_RS19330 (G7048_19325) | - | 4209724..4210572 (+) | 849 | WP_166069703.1 | head maturation protease, ClpP-related | - |
| G7048_RS19335 (G7048_19330) | - | 4210569..4211747 (+) | 1179 | WP_166066871.1 | phage major capsid protein | - |
| G7048_RS19340 (G7048_19335) | - | 4211759..4211917 (+) | 159 | WP_166069704.1 | hypothetical protein | - |
| G7048_RS19345 (G7048_19340) | - | 4211920..4212261 (+) | 342 | WP_166066869.1 | head-tail connector protein | - |
| G7048_RS19350 (G7048_19345) | - | 4212264..4212590 (+) | 327 | WP_166069705.1 | phage head closure protein | - |
| G7048_RS19355 (G7048_19350) | - | 4212590..4213021 (+) | 432 | WP_166069706.1 | hypothetical protein | - |
| G7048_RS19360 (G7048_19355) | - | 4213018..4213371 (+) | 354 | WP_166069707.1 | DUF3168 domain-containing protein | - |
| G7048_RS28675 | - | 4213382..4213504 (-) | 123 | WP_256376531.1 | hypothetical protein | - |
| G7048_RS19365 (G7048_19360) | - | 4213503..4214150 (+) | 648 | WP_166069708.1 | phage tail tube protein | - |
| G7048_RS19370 (G7048_19365) | - | 4214258..4214650 (+) | 393 | WP_166069709.1 | phage tail assembly chaperone | - |
| G7048_RS28340 | - | 4214797..4214967 (+) | 171 | WP_240933038.1 | DUF1799 domain-containing protein | - |
| G7048_RS19380 (G7048_19375) | - | 4215035..4215496 (+) | 462 | WP_166069711.1 | hypothetical protein | - |
| G7048_RS19385 (G7048_19380) | - | 4215632..4220932 (+) | 5301 | WP_166069712.1 | phage tail length tape measure family protein | - |
| G7048_RS19390 (G7048_19385) | - | 4220929..4221846 (+) | 918 | WP_166066859.1 | carbohydrate-binding protein | - |
| G7048_RS19395 (G7048_19390) | - | 4221843..4222994 (+) | 1152 | WP_166069713.1 | hypothetical protein | - |
| G7048_RS19400 (G7048_19395) | - | 4222994..4223689 (+) | 696 | WP_166069715.1 | hypothetical protein | - |
| G7048_RS19405 (G7048_19400) | - | 4223697..4224257 (+) | 561 | WP_166069716.1 | hypothetical protein | - |
| G7048_RS19410 (G7048_19405) | - | 4224346..4224573 (+) | 228 | WP_166069041.1 | hypothetical protein | - |
| G7048_RS19415 (G7048_19410) | - | 4224557..4225186 (+) | 630 | WP_166069042.1 | lysozyme | - |
| G7048_RS19420 (G7048_19415) | - | 4225183..4225506 (+) | 324 | WP_166069717.1 | DUF6527 family protein | - |
| G7048_RS19425 (G7048_19420) | - | 4225482..4226000 (+) | 519 | WP_166069718.1 | lysis system i-spanin subunit Rz | - |
| G7048_RS19430 (G7048_19425) | - | 4226008..4226949 (-) | 942 | WP_166069719.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18303.15 Da Isoelectric Point: 6.4875
>NTDB_id=428556 G7048_RS19125 WP_166069666.1 4186042..4186539(-) (ssb) [Diaphorobacter sp. HDW4B]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKTTGENKEATEWHRVTFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDPQSGQERYSTEIRADQMQMLGSRQGSGDDSRQHEYDEPAPRPAPAPRAPAQRQAPAPAPRQAGGSGFDDMD
SDIPF
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKTTGENKEATEWHRVTFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDPQSGQERYSTEIRADQMQMLGSRQGSGDDSRQHEYDEPAPRPAPAPRAPAQRQAPAPAPRQAGGSGFDDMD
SDIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=428556 G7048_RS19125 WP_166069666.1 4186042..4186539(-) (ssb) [Diaphorobacter sp. HDW4B]
ATGGCATCCGTCAACAAAGTCATCATCGTTGGCAATTTGGGCCGCGACCCAGAAATGCGCACCTTTCCCAGCGGCGACCA
AGTGGCGAACGTCACCATTGCCACAACCGACCGCTGGCGCGACAAGACGACTGGCGAAAACAAAGAGGCGACCGAATGGC
ATCGCGTCACGTTCAATGGCCGTCTGGCAGAGATCGCAGGTCAGTACCTGCGCAAGGGCTCGCAAGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCCACAAAGCGGCCAAGAACGCTACTCAACTGAAATCCGCGCCGATCAAATGCA
GATGCTTGGAAGCCGCCAAGGTAGTGGCGACGATAGCCGACAGCATGAGTATGACGAGCCAGCGCCCCGCCCTGCTCCAG
CGCCACGCGCACCAGCCCAACGGCAGGCCCCAGCGCCTGCGCCGCGTCAGGCGGGCGGTAGCGGCTTCGATGACATGGAC
TCGGACATCCCATTTTAG
ATGGCATCCGTCAACAAAGTCATCATCGTTGGCAATTTGGGCCGCGACCCAGAAATGCGCACCTTTCCCAGCGGCGACCA
AGTGGCGAACGTCACCATTGCCACAACCGACCGCTGGCGCGACAAGACGACTGGCGAAAACAAAGAGGCGACCGAATGGC
ATCGCGTCACGTTCAATGGCCGTCTGGCAGAGATCGCAGGTCAGTACCTGCGCAAGGGCTCGCAAGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCCACAAAGCGGCCAAGAACGCTACTCAACTGAAATCCGCGCCGATCAAATGCA
GATGCTTGGAAGCCGCCAAGGTAGTGGCGACGATAGCCGACAGCATGAGTATGACGAGCCAGCGCCCCGCCCTGCTCCAG
CGCCACGCGCACCAGCCCAACGGCAGGCCCCAGCGCCTGCGCCGCGTCAGGCGGGCGGTAGCGGCTTCGATGACATGGAC
TCGGACATCCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.494 |
100 |
0.588 |
| ssb | Glaesserella parasuis strain SC1401 |
49.724 |
100 |
0.545 |
| ssb | Neisseria meningitidis MC58 |
42.077 |
100 |
0.467 |
| ssb | Neisseria gonorrhoeae MS11 |
43.429 |
100 |
0.461 |