Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7048_RS12685 Genome accession   NZ_CP049905
Coordinates   2765903..2766487 (-) Length   194 a.a.
NCBI ID   WP_166068486.1    Uniprot ID   A0A6G8BX03
Organism   Diaphorobacter sp. HDW4B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2760903..2771487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS12670 (G7048_12665) - 2761291..2762289 (+) 999 WP_166068483.1 tripartite tricarboxylate transporter substrate binding protein -
  G7048_RS12675 (G7048_12670) - 2762310..2763278 (+) 969 WP_166068484.1 tripartite tricarboxylate transporter substrate binding protein -
  G7048_RS12680 (G7048_12675) - 2763391..2765544 (-) 2154 WP_166068485.1 bifunctional diguanylate cyclase/phosphodiesterase -
  G7048_RS12685 (G7048_12680) ssb 2765903..2766487 (-) 585 WP_166068486.1 single-stranded DNA-binding protein Machinery gene
  G7048_RS12690 (G7048_12685) - 2766606..2767823 (-) 1218 WP_166068487.1 MFS transporter -
  G7048_RS12695 (G7048_12690) - 2767980..2769524 (-) 1545 WP_166068488.1 MFS transporter -
  G7048_RS12700 (G7048_12695) - 2769537..2770043 (-) 507 WP_166068489.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20775.93 Da        Isoelectric Point: 5.9506

>NTDB_id=428550 G7048_RS12685 WP_166068486.1 2765903..2766487(-) (ssb) [Diaphorobacter sp. HDW4B]
MASVNKVIIVGNLGKDPELRTFPNGDQVANVTIATTDRWRDKNTGENREITEWHRVMFTGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDQQGQERYTTEIRADQMQMLGSRQGMGGGQGGGAQGGYDDSGYGGGGNDGGYDAAPSPAPQRRAAPAPMAAA
APRPAPAPRPAPAPVQQAPRANSGFDDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=428550 G7048_RS12685 WP_166068486.1 2765903..2766487(-) (ssb) [Diaphorobacter sp. HDW4B]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGCAAGGACCCCGAACTGCGCACCTTCCCGAACGGCGATCA
GGTCGCCAACGTCACCATCGCCACGACAGACCGCTGGCGCGACAAGAACACCGGCGAAAACCGCGAAATCACCGAATGGC
ACCGCGTGATGTTCACCGGCCGCCTGGCCGAAATCGCTGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGCAAGGACAGGAACGCTACACCACCGAAATCCGCGCTGACCAGATGCAGAT
GCTCGGCAGCCGCCAAGGCATGGGTGGCGGCCAAGGTGGCGGTGCTCAAGGCGGTTACGACGACAGCGGCTACGGTGGAG
GTGGCAACGACGGCGGCTACGACGCAGCGCCATCCCCAGCCCCCCAGCGCCGCGCCGCGCCTGCGCCCATGGCGGCAGCA
GCCCCCCGCCCGGCACCCGCTCCACGTCCAGCCCCCGCACCCGTGCAACAGGCACCGCGCGCGAATTCGGGCTTTGACGA
CATGGATGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8BX03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.821

100

0.531
  ssb Vibrio cholerae strain A1552

49

100

0.505
  ssb Neisseria gonorrhoeae MS11

45.078

99.485

0.448
  ssb Neisseria meningitidis MC58

44.041

99.485

0.438