Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V753_RS16435 Genome accession   NZ_CP049904
Coordinates   3349328..3350017 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GB03     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3344328..3355017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS16400 (V753_16370) - 3344525..3345007 (-) 483 WP_007614101.1 flagellar protein FlgN -
  V753_RS16405 (V753_16375) flgM 3345022..3345288 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V753_RS16410 (V753_16380) - 3345358..3345777 (-) 420 WP_007614102.1 TIGR03826 family flagellar region protein -
  V753_RS16415 (V753_16385) comFC 3345851..3346540 (-) 690 WP_200866785.1 phosphoribosyltransferase family protein Machinery gene
  V753_RS16420 (V753_16390) - 3346546..3346830 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  V753_RS16425 (V753_16395) comFA 3346888..3348273 (-) 1386 WP_007614104.1 DEAD/DEAH box helicase Machinery gene
  V753_RS16430 (V753_16400) - 3348382..3349230 (-) 849 WP_007614105.1 DegV family protein -
  V753_RS16435 (V753_16405) degU 3349328..3350017 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V753_RS16440 (V753_16410) degS 3350094..3351257 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  V753_RS16445 (V753_16415) - 3351480..3352127 (+) 648 WP_007614107.1 YigZ family protein -
  V753_RS16450 (V753_16420) - 3352132..3353313 (+) 1182 WP_007614108.1 LCP family protein -
  V753_RS16455 (V753_16425) - 3353416..3354492 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=428527 V753_RS16435 WP_003219701.1 3349328..3350017(-) (degU) [Bacillus velezensis strain GB03]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=428527 V753_RS16435 WP_003219701.1 3349328..3350017(-) (degU) [Bacillus velezensis strain GB03]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAATTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1