Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G7Y90_RS15530 Genome accession   NZ_CP049902
Coordinates   3100706..3101713 (+) Length   335 a.a.
NCBI ID   WP_284143756.1    Uniprot ID   -
Organism   Psychrobacter sp. WY6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095706..3106713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Y90_RS15515 - 3096187..3097275 (-) 1089 WP_045451193.1 serine hydrolase -
  G7Y90_RS15520 - 3097701..3098336 (+) 636 WP_055123802.1 response regulator -
  G7Y90_RS15525 - 3098532..3100331 (+) 1800 WP_250162838.1 ATP-binding protein -
  G7Y90_RS18140 pilR 3100425..3100709 (+) 285 WP_284143755.1 response regulator Regulator
  G7Y90_RS15530 pilR 3100706..3101713 (+) 1008 WP_284143756.1 sigma-54 dependent transcriptional regulator Regulator
  G7Y90_RS15535 - 3101740..3102144 (+) 405 WP_250162839.1 helix-turn-helix domain-containing protein -
  G7Y90_RS15540 - 3102223..3103488 (-) 1266 WP_250162840.1 S41 family peptidase -
  G7Y90_RS15545 - 3103460..3103723 (-) 264 WP_250162841.1 hypothetical protein -
  G7Y90_RS15550 gpmI 3104076..3105732 (-) 1657 Protein_3090 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37347.75 Da        Isoelectric Point: 6.8848

>NTDB_id=428459 G7Y90_RS15530 WP_284143756.1 3100706..3101713(+) (pilR) [Psychrobacter sp. WY6]
MKLGAFDFVNKPLELPRLRQLVENALKVIHQDNEAKATAECSPEQKLLDSRLIGDSAVMHPLKNTILKLARSQAPVFLSG
ASGTGKEVVARLIHDLSPRRDGSFVPVNCGAIPSELMESEFFGHKKGSFTGAVADKQGLFQQANGGTLFLDEVADLPLAM
QVKLLRAIQEKTVRAIGDTKEVPVDIRILSATHKNLNQLVQDGAFRQDLYYRINVIELKLPTLNARRDDIPVLAKHFLAL
IADEWQLENPPTLTIEACERLQDHNFAGNVRELRNVLERAVTLAETPYIDISHLGLPDIDMTHHRAASQDQSEPAVIDKT
QHSERQKTTKWSLNR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=428459 G7Y90_RS15530 WP_284143756.1 3100706..3101713(+) (pilR) [Psychrobacter sp. WY6]
TTGAAGCTTGGTGCTTTTGACTTTGTGAATAAACCTCTTGAGTTACCGCGCCTACGTCAACTGGTGGAAAATGCTTTAAA
AGTTATTCATCAAGACAATGAAGCAAAAGCCACAGCCGAATGCTCACCTGAACAAAAACTGCTGGACAGTAGACTCATTG
GTGATTCTGCAGTGATGCACCCACTGAAAAACACTATTTTAAAATTGGCACGCTCACAAGCACCTGTATTTTTGTCAGGC
GCTTCGGGTACTGGTAAAGAAGTGGTTGCCCGATTGATTCATGATTTAAGCCCACGCCGTGATGGTAGCTTTGTGCCAGT
AAACTGTGGAGCAATACCATCAGAGCTGATGGAATCAGAGTTTTTTGGTCATAAAAAAGGTAGTTTTACAGGGGCTGTCG
CTGACAAGCAAGGGCTGTTTCAGCAGGCCAATGGCGGCACGTTATTTTTAGACGAGGTAGCAGACTTGCCTTTGGCCATG
CAGGTAAAACTACTGCGTGCCATTCAAGAGAAAACGGTGAGAGCCATTGGTGATACCAAAGAGGTTCCTGTAGATATTCG
TATCTTGTCCGCCACCCACAAAAATTTAAACCAACTGGTACAGGATGGGGCATTTCGACAAGATTTATACTACCGTATCA
ATGTGATTGAATTAAAACTGCCAACGCTCAATGCGCGTCGTGATGACATTCCTGTATTAGCAAAGCACTTTTTAGCATTA
ATTGCTGATGAATGGCAGTTAGAGAACCCTCCAACACTTACCATCGAGGCTTGTGAGCGTTTGCAAGATCATAACTTTGC
GGGCAATGTCCGTGAACTACGTAACGTCCTTGAACGTGCCGTCACCCTAGCAGAGACGCCGTACATTGACATCAGCCATT
TGGGTTTGCCTGATATTGATATGACTCATCACCGTGCAGCCTCTCAAGATCAGAGTGAGCCAGCAGTTATTGATAAAACT
CAACATTCTGAACGTCAAAAAACAACCAAATGGTCGCTCAATCGATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(52-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.621

100

0.561
  pilR Acinetobacter baumannii strain A118

56.522

89.254

0.504
  luxO Vibrio cholerae strain A1552

42.424

88.657

0.376