Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G7Y90_RS18140 Genome accession   NZ_CP049902
Coordinates   3100425..3100709 (+) Length   94 a.a.
NCBI ID   WP_284143755.1    Uniprot ID   -
Organism   Psychrobacter sp. WY6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095425..3105709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Y90_RS15510 - 3095618..3096016 (-) 399 WP_250162837.1 thiamine phosphate synthase -
  G7Y90_RS15515 - 3096187..3097275 (-) 1089 WP_045451193.1 serine hydrolase -
  G7Y90_RS15520 - 3097701..3098336 (+) 636 WP_055123802.1 response regulator -
  G7Y90_RS15525 - 3098532..3100331 (+) 1800 WP_250162838.1 ATP-binding protein -
  G7Y90_RS18140 pilR 3100425..3100709 (+) 285 WP_284143755.1 response regulator Regulator
  G7Y90_RS15530 pilR 3100706..3101713 (+) 1008 WP_284143756.1 sigma-54 dependent transcriptional regulator Regulator
  G7Y90_RS15535 - 3101740..3102144 (+) 405 WP_250162839.1 helix-turn-helix domain-containing protein -
  G7Y90_RS15540 - 3102223..3103488 (-) 1266 WP_250162840.1 S41 family peptidase -
  G7Y90_RS15545 - 3103460..3103723 (-) 264 WP_250162841.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10324.76 Da        Isoelectric Point: 4.2389

>NTDB_id=428460 G7Y90_RS18140 WP_284143755.1 3100425..3100709(+) (pilR) [Psychrobacter sp. WY6]
MTTTALVVDDEVDLCRLMQITLTKMGIKSDVAYTLSQARSYWQDNDYDFCLTDLKLPDGSGLELVKEISNSSSTPIAVIT
AHGSMDLAIEALKH

Nucleotide


Download         Length: 285 bp        

>NTDB_id=428460 G7Y90_RS18140 WP_284143755.1 3100425..3100709(+) (pilR) [Psychrobacter sp. WY6]
ATGACAACAACCGCGCTAGTCGTTGATGACGAAGTGGATCTGTGCCGATTGATGCAAATTACTTTGACCAAAATGGGCAT
TAAAAGTGATGTAGCATATACTCTGTCGCAAGCAAGATCATACTGGCAAGACAATGATTACGATTTTTGCCTGACTGATT
TAAAGCTGCCTGATGGGTCAGGACTAGAGTTGGTAAAAGAAATCAGTAATAGCTCTAGTACGCCCATTGCCGTGATTACT
GCTCACGGCAGTATGGATCTCGCCATTGAAGCATTGAAGCATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

61.798

94.681

0.585
  pilR Pseudomonas aeruginosa PAK

48.889

95.745

0.468