Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G7Y90_RS01325 Genome accession   NZ_CP049902
Coordinates   269649..270638 (-) Length   329 a.a.
NCBI ID   WP_250163182.1    Uniprot ID   -
Organism   Psychrobacter sp. WY6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 268483..269648 269649..270638 flank 1


Gene organization within MGE regions


Location: 268483..270638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Y90_RS01320 - 268483..269648 (+) 1166 WP_250163181.1 IS3 family transposase -
  G7Y90_RS01325 comM 269649..270638 (-) 990 WP_250163182.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35946.93 Da        Isoelectric Point: 4.8342

>NTDB_id=428452 G7Y90_RS01325 WP_250163182.1 269649..270638(-) (comM) [Psychrobacter sp. WY6]
MRLFTSKSQNLIGVDICATSVKLVDIQRQQGMFHLKSYGIERLPEGIVVDKLLVDTEAVGHIIANLAKRCHVAGSSAATA
VSGSAVITKIIDMDAALSDVEREAQIRLDADQYIPYPLEDVNLDFEVLGPSLASDDMVQVLLAASRSENVDQRVDALTFG
GLQTKVMDIESHAIERAFGLMVNNLPNAPELVALIDIGHNQTTLYVAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
AVSKRERTLPDDYYLDVLTPFIENAIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSISGLAGMAQQKLGVTVSIADPCRQ
IRIHKLGRF

Nucleotide


Download         Length: 990 bp        

>NTDB_id=428452 G7Y90_RS01325 WP_250163182.1 269649..270638(-) (comM) [Psychrobacter sp. WY6]
GTGAGGCTATTTACTTCCAAAAGTCAGAATTTAATTGGTGTGGATATCTGTGCCACTTCAGTAAAGTTGGTTGACATACA
GCGCCAACAGGGCATGTTTCATCTAAAATCTTATGGTATTGAAAGACTGCCAGAAGGTATAGTCGTCGATAAACTTCTTG
TAGATACTGAAGCGGTTGGTCATATTATTGCTAACTTAGCTAAACGTTGTCATGTCGCTGGTAGTAGTGCTGCAACTGCC
GTGTCAGGGTCAGCAGTAATCACTAAAATTATTGATATGGATGCTGCGCTAAGCGACGTTGAGCGTGAAGCGCAGATACG
TTTAGATGCTGATCAATACATACCTTATCCATTAGAAGACGTCAACCTAGACTTTGAAGTTTTAGGGCCTTCTTTAGCAA
GTGATGACATGGTGCAAGTCTTACTTGCCGCATCACGCTCGGAGAATGTTGACCAAAGAGTTGATGCCTTAACCTTTGGT
GGTCTTCAAACGAAGGTCATGGATATTGAATCCCATGCGATAGAGCGTGCTTTTGGACTCATGGTAAATAACTTACCAAA
TGCCCCTGAGTTAGTTGCTTTGATAGATATTGGTCACAATCAAACGACTTTATATGTTGCTAAGAACGGTGAGTTTATCT
ATAGCCGTGAACAATTATTTGGTGGTGTTCAGTTAACAGAAGCGATACAAAACCGTTATGGACTATCTGCTGAAGAAGCG
GCTGTTAGTAAGCGTGAGCGTACCTTACCAGATGACTACTATCTTGATGTGCTGACGCCTTTTATCGAAAATGCTATTCA
ACAAATTACTCGCTCATTGCAATTTTATTTTTCTTCAAGCCAATACAGTAGTATCGATCATGTGGTCCTTGCTGGTGGTA
GTAGCTCTATTTCTGGTCTTGCTGGCATGGCACAGCAAAAACTTGGGGTGACTGTCAGTATTGCTGACCCCTGCCGTCAA
ATCCGTATACATAAACTTGGGAGATTTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

49.844

97.568

0.486
  pilM Acinetobacter baumannii D1279779

49.844

97.568

0.486
  comM Acinetobacter baylyi ADP1

47.04

97.568

0.459
  pilM Legionella pneumophila strain ERS1305867

39.144

99.392

0.389