Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7078_RS01010 Genome accession   NZ_CP049871
Coordinates   194822..195325 (-) Length   167 a.a.
NCBI ID   WP_166092095.1    Uniprot ID   A0A6G7ZKS9
Organism   Sphingomonas sinipercae strain HDW15C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 189822..200325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7078_RS00980 (G7078_00980) - 189912..191174 (-) 1263 WP_166092081.1 MFS transporter -
  G7078_RS00985 (G7078_00985) - 191235..192398 (-) 1164 WP_166092084.1 class V aminotransferase -
  G7078_RS00990 (G7078_00990) - 192395..193162 (-) 768 WP_166092086.1 tryptophan 2,3-dioxygenase family protein -
  G7078_RS00995 (G7078_00995) - 193208..193669 (-) 462 WP_166092087.1 outer membrane protein assembly factor BamE -
  G7078_RS01000 (G7078_01000) - 193757..194266 (+) 510 WP_166092090.1 ubiquinol-cytochrome C chaperone family protein -
  G7078_RS01005 (G7078_01005) - 194266..194793 (+) 528 WP_166092092.1 DUF177 domain-containing protein -
  G7078_RS01010 (G7078_01010) ssb 194822..195325 (-) 504 WP_166092095.1 single-stranded DNA-binding protein Machinery gene
  G7078_RS01015 (G7078_01015) - 195336..197183 (-) 1848 WP_166092097.1 ferrous iron transporter B -
  G7078_RS01020 (G7078_01020) - 197191..197457 (-) 267 WP_166092100.1 FeoA family protein -
  G7078_RS01025 (G7078_01025) - 197534..198181 (-) 648 WP_166092102.1 COQ9 family protein -
  G7078_RS01030 (G7078_01030) - 198187..199080 (-) 894 WP_166092104.1 DMT family transporter -
  G7078_RS01035 (G7078_01035) - 199234..200322 (+) 1089 WP_166092106.1 alkene reductase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17822.30 Da        Isoelectric Point: 5.0172

>NTDB_id=428288 G7078_RS01010 WP_166092095.1 194822..195325(-) (ssb) [Sphingomonas sinipercae strain HDW15C]
MAGSVNKVILVGNLGKDPESRSFQNGGEVVSFSVATSESWKDRNSGDRKEKTEWHNVSIFSEGLARVAKSYLRKGSKVYL
EGQLETRKWQDQSGNDRYTTDVVLRNFNSAMVLLDSRDGGGSGGGSGGGGRDFGDDSFGGGSSRGGGSQSRPQPAAFDTD
LDDDVPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=428288 G7078_RS01010 WP_166092095.1 194822..195325(-) (ssb) [Sphingomonas sinipercae strain HDW15C]
GTGGCAGGCAGCGTGAACAAGGTCATCCTGGTGGGGAACCTCGGCAAGGACCCCGAGTCGCGCAGTTTCCAGAATGGCGG
CGAAGTCGTCAGCTTCAGCGTCGCGACGTCGGAAAGCTGGAAGGACCGCAACTCCGGCGACCGCAAGGAAAAGACCGAGT
GGCACAATGTCTCGATCTTCTCCGAAGGGCTGGCCCGAGTCGCCAAGAGCTATTTGCGCAAGGGCTCGAAGGTCTACCTC
GAAGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGTCGGGCAACGACCGCTACACGACCGATGTCGTCCTGCGGAACTT
CAACAGCGCGATGGTCCTGCTCGACAGCCGTGACGGCGGCGGTTCGGGCGGTGGCTCAGGCGGCGGTGGCCGCGATTTCG
GCGACGACAGCTTCGGCGGCGGCAGCAGCCGGGGCGGCGGTTCGCAGTCCCGTCCGCAGCCGGCGGCGTTCGACACCGAC
CTGGACGACGACGTTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7ZKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.521
  ssb Vibrio cholerae strain A1552

47.399

100

0.491
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.437
  ssb Neisseria meningitidis MC58

40.782

100

0.437