Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7077_RS07340 Genome accession   NZ_CP049869
Coordinates   1467635..1468132 (+) Length   165 a.a.
NCBI ID   WP_166411131.1    Uniprot ID   A0A6G7YPS4
Organism   Sphingomonas piscis strain HDW15B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1462635..1473132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7077_RS07315 (G7077_07330) ribH 1463476..1463898 (+) 423 WP_166411127.1 6,7-dimethyl-8-ribityllumazine synthase -
  G7077_RS07320 (G7077_07335) - 1463973..1464794 (+) 822 WP_246167098.1 DMT family transporter -
  G7077_RS07325 (G7077_07340) - 1464791..1465444 (+) 654 WP_166411128.1 COQ9 family protein -
  G7077_RS07330 (G7077_07345) - 1465494..1465757 (+) 264 WP_166411129.1 FeoA family protein -
  G7077_RS07335 (G7077_07350) - 1465760..1467607 (+) 1848 WP_166411130.1 ferrous iron transporter B -
  G7077_RS07340 (G7077_07355) ssb 1467635..1468132 (+) 498 WP_166411131.1 single-stranded DNA-binding protein Machinery gene
  G7077_RS07345 (G7077_07360) - 1468129..1468656 (-) 528 WP_166411132.1 DUF177 domain-containing protein -
  G7077_RS07350 (G7077_07365) - 1468653..1469153 (-) 501 WP_166411133.1 ubiquinol-cytochrome C chaperone family protein -
  G7077_RS07355 (G7077_07370) bamE 1469270..1469740 (+) 471 WP_166411134.1 outer membrane protein assembly factor BamE -
  G7077_RS14290 - 1469780..1470022 (+) 243 WP_281347021.1 tryptophan 2,3-dioxygenase family protein -
  G7077_RS14295 (G7077_07375) - 1470022..1470546 (+) 525 WP_281347063.1 tryptophan 2,3-dioxygenase family protein -
  G7077_RS07365 (G7077_07380) - 1470543..1471697 (+) 1155 WP_166411135.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17834.48 Da        Isoelectric Point: 5.0338

>NTDB_id=428276 G7077_RS07340 WP_166411131.1 1467635..1468132(+) (ssb) [Sphingomonas piscis strain HDW15B]
MAGVNKVILVGNLGADPESRSLNNGGEVVNLRVATSETWKDRDGQRQERTEWHQVVIFNENLGKVAKSYLRKGSKVYLEG
QLQTRKWTDNNGNDRYSTEIVLQRFRGELVLLDGRDGGGGGGGRSDFGDEFGGGGYSGGGGGGSRPQSRPQPAAFDTDLD
DDVPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=428276 G7077_RS07340 WP_166411131.1 1467635..1468132(+) (ssb) [Sphingomonas piscis strain HDW15B]
ATGGCGGGCGTGAACAAGGTGATCCTGGTCGGCAATCTTGGCGCGGACCCGGAGTCGCGGTCGCTCAACAATGGCGGCGA
GGTCGTGAACCTGCGCGTCGCAACGTCCGAGACGTGGAAGGACCGGGACGGCCAGCGCCAGGAGCGCACCGAGTGGCACC
AGGTGGTGATCTTCAACGAAAATCTGGGGAAGGTCGCCAAGAGCTACCTTCGCAAGGGCAGCAAGGTCTATCTCGAAGGT
CAGCTGCAGACTCGCAAGTGGACGGATAACAACGGCAACGACCGTTATTCGACGGAGATCGTCCTGCAACGGTTCCGTGG
TGAACTGGTCCTGCTTGACGGTCGCGACGGCGGCGGTGGCGGCGGCGGCCGCTCCGACTTCGGCGACGAATTCGGAGGCG
GCGGCTACTCAGGCGGTGGCGGCGGCGGATCGCGTCCCCAGTCGCGCCCGCAACCGGCGGCGTTCGACACGGATCTCGAC
GACGACGTTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7YPS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.552
  ssb Vibrio cholerae strain A1552

47.126

100

0.497
  ssb Neisseria meningitidis MC58

40.113

100

0.43
  ssb Neisseria gonorrhoeae MS11

40.113

100

0.43