Detailed information NTG0428255

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: IF702_RS01730
• Genome accession: NZ_CP062384
• Coordinates: 322006..322692 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692885.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NAS_AN_050
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 317006..327692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF702_RS01715 (IF702_01710)	-	317120..319750 (+)	2631	WP_000425356.1	valine--tRNA ligase	-
IF702_RS01720 (IF702_01715)	-	319763..321034 (+)	1272	WP_001108332.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
IF702_RS01725 (IF702_01720)	-	321302..322009 (+)	708	WP_000261124.1	A24 family peptidase	-
IF702_RS01730 (IF702_01725)	ysxA/radC	322006..322692 (+)	687	WP_000692885.1	DNA repair protein RadC	Machinery gene
IF702_RS01735 (IF702_01730)	-	322760..323044 (+)	285	WP_000171863.1	hypothetical protein	-
IF702_RS01740 (IF702_01735)	-	323159..323356 (-)	198	WP_000025835.1	hypothetical protein	-
IF702_RS01745 (IF702_01740)	-	323516..323989 (+)	474	WP_031928193.1	DUF4930 family protein	-
IF702_RS01750 (IF702_01745)	-	324063..324182 (+)	120	WP_000840600.1	hypothetical protein	-
IF702_RS01755 (IF702_01750)	mreC	324381..325223 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IF702_RS01760 (IF702_01755)	mreD	325223..325753 (+)	531	WP_001259927.1	rod shape-determining protein MreD	-
IF702_RS01765 (IF702_01760)	rplU	325989..326297 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IF702_RS01770 (IF702_01765)	-	326303..326623 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IF702_RS01775 (IF702_01770)	rpmA	326635..326919 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25293.20 Da
• Isoelectric Point: 6.7572

>NTDB_id=428255 IF702_RS01730 WP_000692885.1 322006..322692(+) (ysxA/radC) [Staphylococcus aureus strain NAS_AN_050]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTIRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=428255 IF702_RS01730 WP_000692885.1 322006..322692(+) (ysxA/radC) [Staphylococcus aureus strain NAS_AN_050]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCAGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCATCACAAGAAGATAT
CATAACAACAATAAGATTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377