Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   G7069_RS05360 Genome accession   NZ_CP049864
Coordinates   1131095..1132153 (+) Length   352 a.a.
NCBI ID   WP_166295063.1    Uniprot ID   A0A6G7YWF4
Organism   Lysobacter sp. HDW10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1126095..1137153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7069_RS05345 (G7069_05345) - 1126429..1127787 (+) 1359 WP_166295057.1 ATP-binding protein -
  G7069_RS05350 (G7069_05350) - 1127756..1128373 (-) 618 WP_166295059.1 hypothetical protein -
  G7069_RS05355 (G7069_05355) - 1128439..1130904 (-) 2466 WP_166295061.1 penicillin-binding protein 1A -
  G7069_RS05360 (G7069_05360) pilM 1131095..1132153 (+) 1059 WP_166295063.1 pilus assembly protein PilM Machinery gene
  G7069_RS05365 (G7069_05365) - 1132153..1132950 (+) 798 WP_166295065.1 PilN domain-containing protein -
  G7069_RS05370 (G7069_05370) pilO 1132954..1133595 (+) 642 WP_166295067.1 type 4a pilus biogenesis protein PilO -
  G7069_RS05375 (G7069_05375) - 1133595..1134131 (+) 537 WP_166295069.1 pilus assembly protein PilP -
  G7069_RS05380 (G7069_05380) pilQ 1134149..1136017 (+) 1869 WP_240912487.1 type IV pilus secretin PilQ -
  G7069_RS05385 (G7069_05385) - 1136161..1137147 (+) 987 WP_166295071.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37683.06 Da        Isoelectric Point: 4.4488

>NTDB_id=428242 G7069_RS05360 WP_166295063.1 1131095..1132153(+) (pilM) [Lysobacter sp. HDW10]
MGFIRKSSAPLVGVDISSTAVKLLQLSRSGTGYRVENYAVEPLPANAVVEKSIADIDAVGQAIRRAAERAGIKTKGAAAA
VPGSSVISRVIPMAANLSEEDMEAQVEVEAGNYVPYPMEEVNYDFEVLGPMPNAPDSVQVLLVASRSENVEARQAALEMG
GLEAKLVDVEAFAIENAFSLIVPQLTAKKDGLVALVDIGASMTTINVLQQGRSQYLREQQFGGKQLTDEIMRRYGLSYEE
AGRAKRLGGLPDTYEVEVLEPFKDSLAQQVGRLLQFYYASSQYNRVDQIVVAGGCASIAGIAQVIEENLGVPTIVANPLA
QMTLDRRVQANALALDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=428242 G7069_RS05360 WP_166295063.1 1131095..1132153(+) (pilM) [Lysobacter sp. HDW10]
GTGGGGTTTATTCGAAAATCGAGCGCGCCGCTTGTCGGCGTCGATATCAGCAGCACGGCTGTCAAGCTGTTGCAGCTGTC
TAGGAGCGGGACCGGTTATCGCGTTGAAAACTACGCGGTTGAGCCACTTCCGGCGAACGCCGTTGTCGAGAAATCCATTG
CGGATATCGACGCGGTTGGTCAAGCCATCCGCCGCGCAGCAGAACGCGCAGGCATCAAAACCAAGGGTGCAGCCGCGGCT
GTGCCGGGCTCCAGCGTCATCAGTCGTGTCATTCCGATGGCGGCTAACCTCAGTGAAGAGGACATGGAAGCCCAAGTGGA
AGTCGAGGCCGGCAACTATGTGCCGTACCCGATGGAAGAAGTGAATTACGACTTCGAAGTGCTCGGGCCGATGCCGAATG
CGCCCGATTCCGTCCAAGTGCTCCTGGTAGCCTCACGTTCTGAAAACGTCGAAGCCCGCCAAGCCGCCTTGGAAATGGGT
GGCCTGGAAGCGAAATTGGTCGATGTTGAGGCCTTCGCGATTGAAAACGCCTTCAGCCTGATCGTGCCGCAACTGACCGC
CAAGAAAGATGGCTTGGTCGCTTTGGTCGATATCGGCGCATCCATGACCACGATCAACGTCCTGCAACAGGGCCGTAGCC
AATATCTGCGCGAGCAGCAATTTGGCGGCAAGCAGCTGACGGACGAAATCATGCGCCGTTACGGCTTGAGCTACGAAGAA
GCCGGCCGCGCCAAGCGCCTCGGCGGTCTGCCTGACACGTACGAAGTGGAAGTGCTGGAACCCTTCAAAGATTCACTTGC
GCAGCAGGTGGGTCGTTTGCTCCAGTTCTACTACGCCAGCAGCCAGTACAACCGTGTTGACCAAATTGTGGTCGCCGGCG
GGTGTGCATCGATCGCAGGCATCGCGCAGGTGATTGAAGAAAACCTGGGTGTGCCCACCATCGTCGCGAACCCGCTTGCC
CAAATGACGCTTGACCGTCGTGTGCAGGCCAACGCATTGGCATTGGACGCCCCGGCCTTGATGATTGCCTGCGGCCTCGC
GATGAGGAGCTTCGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7YWF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50

98.864

0.494
  comM Acinetobacter nosocomialis M2

50

98.864

0.494
  comM Acinetobacter baylyi ADP1

46.705

99.148

0.463
  pilM Legionella pneumophila strain ERS1305867

43.909

100

0.44