Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G8765_RS00285 Genome accession   NZ_CP049828
Coordinates   65911..66420 (-) Length   169 a.a.
NCBI ID   WP_176381297.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 60911..71420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8765_RS00260 (G8765_00260) - 60955..62223 (-) 1269 WP_176374355.1 MFS transporter -
  G8765_RS00265 (G8765_00265) - 62198..62956 (-) 759 WP_176374356.1 nucleotidyltransferase domain-containing protein -
  G8765_RS00270 (G8765_00270) - 62953..64038 (-) 1086 WP_176381296.1 DUF455 family protein -
  G8765_RS00275 (G8765_00275) - 64147..65337 (-) 1191 WP_139144537.1 hypothetical protein -
  G8765_RS00280 (G8765_00280) - 65403..65627 (-) 225 WP_131688859.1 hypothetical protein -
  G8765_RS00285 (G8765_00285) ssb 65911..66420 (-) 510 WP_176381297.1 single-stranded DNA-binding protein Machinery gene
  G8765_RS00290 (G8765_00290) uvrA 66802..69651 (+) 2850 WP_070258657.1 excinuclease ABC subunit UvrA -
  G8765_RS00295 (G8765_00295) - 69715..70332 (-) 618 WP_176374358.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18106.30 Da        Isoelectric Point: 5.9466

>NTDB_id=428042 G8765_RS00285 WP_176381297.1 65911..66420(-) (ssb) [Janthinobacterium lividum strain EIF2]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVAQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGYEAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=428042 G8765_RS00285 WP_176381297.1 65911..66420(-) (ssb) [Janthinobacterium lividum strain EIF2]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGCCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGTCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGTGGTGGTGGCGGCTACGAAGCCC
CGGCCCCGCGCCAGGCACCGGCTCCGCGCCCAGCCCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCACCGAACTTC
TCGGATATGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

51.124

100

0.538
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.538
  ssb Neisseria meningitidis MC58

50.562

100

0.533
  ssb Vibrio cholerae strain A1552

50.279

100

0.533