Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G8E09_RS01005 Genome accession   NZ_CP049806
Coordinates   223015..223602 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218015..228602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS00980 (G8E09_00980) - 218091..218891 (-) 801 WP_167562899.1 SDR family NAD(P)-dependent oxidoreductase -
  G8E09_RS00985 (G8E09_00985) - 218995..219366 (-) 372 WP_167562900.1 MerR family transcriptional regulator -
  G8E09_RS00990 (G8E09_00990) tenA 219433..220107 (-) 675 WP_167562901.1 thiaminase II -
  G8E09_RS00995 (G8E09_00995) - 220370..221452 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  G8E09_RS01000 (G8E09_01000) yajR 221599..222963 (+) 1365 WP_167562902.1 MFS transporter -
  G8E09_RS01005 (G8E09_01005) ssb 223015..223602 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  G8E09_RS01010 (G8E09_01010) - 223758..224984 (+) 1227 WP_167562903.1 tyrosine-type recombinase/integrase -
  G8E09_RS01015 (G8E09_01015) - 224977..226533 (+) 1557 WP_151764645.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=427963 G8E09_RS01005 WP_005066890.1 223015..223602(+) (ssb) [Acinetobacter pittii strain A1254]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=427963 G8E09_RS01005 WP_005066890.1 223015..223602(+) (ssb) [Acinetobacter pittii strain A1254]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCTGGTGGTTTTGCGCCTAAAGCACCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385