Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | G9P47_RS00435 | Genome accession | NZ_CP049802 |
| Coordinates | 91083..91598 (-) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain Cap 100.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 78573..93366 | 91083..91598 | within | 0 |
Gene organization within MGE regions
Location: 78573..93366
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9P47_RS00340 (G9P47_00340) | - | 78588..79058 (-) | 471 | Protein_67 | terminase small subunit | - |
| G9P47_RS00345 (G9P47_00345) | - | 79111..79413 (-) | 303 | WP_002467101.1 | hypothetical protein | - |
| G9P47_RS00350 (G9P47_00350) | - | 79406..80002 (-) | 597 | WP_002467104.1 | hypothetical protein | - |
| G9P47_RS00355 (G9P47_00355) | - | 80021..80548 (-) | 528 | WP_235065824.1 | hypothetical protein | - |
| G9P47_RS00360 (G9P47_00360) | - | 80563..80907 (-) | 345 | WP_002467111.1 | hypothetical protein | - |
| G9P47_RS00365 (G9P47_00365) | - | 81193..81834 (-) | 642 | WP_002467115.1 | pathogenicity island protein | - |
| G9P47_RS00370 (G9P47_00370) | - | 81836..82213 (-) | 378 | WP_002467110.1 | hypothetical protein | - |
| G9P47_RS00375 (G9P47_00375) | - | 82206..82559 (-) | 354 | WP_002467109.1 | hypothetical protein | - |
| G9P47_RS00380 (G9P47_00380) | - | 82802..84169 (-) | 1368 | WP_002467121.1 | phage/plasmid primase, P4 family | - |
| G9P47_RS00385 (G9P47_00385) | - | 84181..85050 (-) | 870 | WP_002467116.1 | primase alpha helix C-terminal domain-containing protein | - |
| G9P47_RS00390 (G9P47_00390) | - | 85139..85477 (-) | 339 | WP_002467122.1 | hypothetical protein | - |
| G9P47_RS00395 (G9P47_00395) | - | 85479..85685 (-) | 207 | WP_002467105.1 | hypothetical protein | - |
| G9P47_RS12190 | - | 85711..85842 (-) | 132 | WP_002467113.1 | hypothetical protein | - |
| G9P47_RS00400 (G9P47_00400) | - | 85855..86127 (-) | 273 | WP_235065825.1 | helix-turn-helix domain-containing protein | - |
| G9P47_RS00405 (G9P47_00405) | - | 86166..86366 (-) | 201 | WP_002467106.1 | hypothetical protein | - |
| G9P47_RS00410 (G9P47_00410) | - | 86472..87392 (+) | 921 | WP_050969315.1 | helix-turn-helix domain-containing protein | - |
| G9P47_RS00415 (G9P47_00415) | - | 87760..87993 (+) | 234 | WP_002466547.1 | hypothetical protein | - |
| G9P47_RS00420 (G9P47_00420) | - | 88016..89203 (+) | 1188 | WP_002466544.1 | hypothetical protein | - |
| G9P47_RS00425 (G9P47_00425) | - | 89430..90650 (+) | 1221 | WP_002466541.1 | tyrosine-type recombinase/integrase | - |
| G9P47_RS00430 (G9P47_00430) | rpsR | 90796..91038 (-) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| G9P47_RS00435 (G9P47_00435) | ssbA | 91083..91598 (-) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| G9P47_RS00440 (G9P47_00440) | rpsF | 91620..91916 (-) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| G9P47_RS00445 (G9P47_00445) | - | 92292..93113 (+) | 822 | WP_002466546.1 | GH25 family lysozyme | - |
| G9P47_RS00450 (G9P47_00450) | - | 93175..93366 (+) | 192 | WP_002451523.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=427928 G9P47_RS00435 WP_002466536.1 91083..91598(-) (ssbA) [Staphylococcus warneri strain Cap 100.1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=427928 G9P47_RS00435 WP_002466536.1 91083..91598(-) (ssbA) [Staphylococcus warneri strain Cap 100.1]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |