Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G8E00_RS01160 Genome accession   NZ_CP049801
Coordinates   252536..253099 (+) Length   187 a.a.
NCBI ID   WP_166221442.1    Uniprot ID   A0A6G8RRY7
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 247536..258099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS01140 (G8E00_01140) - 248004..248378 (-) 375 WP_166008785.1 hypothetical protein -
  G8E00_RS01145 (G8E00_01145) tenA 249023..249694 (-) 672 WP_166221436.1 thiaminase II -
  G8E00_RS01150 (G8E00_01150) - 249897..250982 (+) 1086 WP_166221438.1 DUF475 domain-containing protein -
  G8E00_RS01155 (G8E00_01155) - 251121..252485 (+) 1365 WP_166221440.1 MFS transporter -
  G8E00_RS01160 (G8E00_01160) ssb 252536..253099 (+) 564 WP_166221442.1 single-stranded DNA-binding protein Machinery gene
  G8E00_RS01165 (G8E00_01165) - 253318..254490 (+) 1173 WP_166221444.1 site-specific integrase -
  G8E00_RS01170 (G8E00_01170) - 254495..256075 (+) 1581 WP_166221446.1 site-specific integrase -
  G8E00_RS01175 (G8E00_01175) - 256072..258075 (+) 2004 WP_166221448.1 integrase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20820.70 Da        Isoelectric Point: 7.2020

>NTDB_id=427895 G8E00_RS01160 WP_166221442.1 252536..253099(+) (ssb) [Acinetobacter shaoyimingii strain 323-1]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQNDGAGEGGFQQPRFNNNNQNGGYGQQGGYNNQAAPGGYGNNNVNQG
FQSPKPQQQPAKPMATAPADLDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=427895 G8E00_RS01160 WP_166221442.1 252536..253099(+) (ssb) [Acinetobacter shaoyimingii strain 323-1]
ATGCGTGGCGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTAAAGATCCGGAAACTAAAACATTTCCGAATGGTGGTTC
TCTCACACAATTTTCTATTGCAACTAGTGAATCTTGGACTGATAAAAATTCGGGTGAACGAAAAGAACAAACAGAATGGC
ACCGAATTGTATTGCACAACCGTTTAGGCGAAATTGCTCAGCAATATTTGCGTAAAGGCTCTAAAGTTTATATTGAAGGT
TCATTGCGTACGCGTCAATGGACAGATCAAAATGGTCAAGAGCGTTACACCACAGAAATCCGTGGTGAACAAATGCAAAT
GCTAGACTCAAACCGTCAGCAAAATGATGGTGCGGGTGAAGGTGGTTTCCAACAACCTCGTTTCAACAATAACAACCAAA
ATGGTGGTTATGGTCAACAAGGTGGTTATAACAACCAAGCAGCACCAGGTGGTTATGGCAACAACAATGTGAATCAAGGT
TTCCAATCTCCTAAACCTCAGCAACAACCTGCTAAGCCTATGGCAACAGCACCTGCTGATTTGGATGATGATTTACCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RRY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.356

100

0.535
  ssb Vibrio cholerae strain A1552

45.263

100

0.46
  ssb Neisseria gonorrhoeae MS11

39.086

100

0.412
  ssb Neisseria meningitidis MC58

39.583

100

0.406