Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7090_RS01315 Genome accession   NZ_CP049786
Coordinates   280641..281174 (+) Length   177 a.a.
NCBI ID   WP_106993941.1    Uniprot ID   -
Organism   Leclercia sp. 29361     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 275641..286174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7090_RS01295 (G7090_01295) aphA 275964..276677 (+) 714 WP_166181302.1 acid phosphatase AphA -
  G7090_RS01300 (G7090_01300) - 276793..277209 (+) 417 WP_166181304.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G7090_RS01305 (G7090_01305) - 277212..277565 (+) 354 WP_106993939.1 MmcQ/YjbR family DNA-binding protein -
  G7090_RS01310 (G7090_01310) uvrA 277566..280391 (-) 2826 WP_106993940.1 excinuclease ABC subunit UvrA -
  G7090_RS01315 (G7090_01315) ssb 280641..281174 (+) 534 WP_106993941.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G7090_RS01320 (G7090_01320) - 281238..281519 (-) 282 WP_106993942.1 YjcB family protein -
  G7090_RS01325 (G7090_01325) - 282068..283462 (+) 1395 WP_166181306.1 sensor domain-containing diguanylate cyclase -
  G7090_RS01330 (G7090_01330) - 283801..285387 (+) 1587 WP_166181309.1 EAL domain-containing protein -
  G7090_RS01335 (G7090_01335) soxS 285384..285710 (-) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18962.00 Da        Isoelectric Point: 5.2456

>NTDB_id=427803 G7090_RS01315 WP_106993941.1 280641..281174(+) (ssb) [Leclercia sp. 29361]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSA
PAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=427803 G7090_RS01315 WP_106993941.1 280641..281174(+) (ssb) [Leclercia sp. 29361]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCAGAAAAATACACCACCGAAGTGGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGCCGTCTGCA
CCCGCGCAGTCCAACGAACCGCCAATGGATTTCGACGACGACATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.383

100

0.599
  ssb Neisseria meningitidis MC58

46.629

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.469