Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7038_RS00605 Genome accession   NZ_CP049756
Coordinates   134444..134944 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain KVNON-213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 129444..139944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7038_RS00590 rlmB 129988..130725 (+) 738 WP_104227668.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G7038_RS00595 sodC 130811..131371 (-) 561 WP_064964961.1 superoxide dismutase family protein -
  G7038_RS00600 uvrA 131442..134272 (-) 2831 Protein_118 excinuclease ABC subunit UvrA -
  G7038_RS00605 ssb 134444..134944 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  G7038_RS00610 - 135088..136374 (+) 1287 WP_005631039.1 site-specific integrase -
  G7038_RS00615 - 136361..137881 (+) 1521 WP_010907418.1 site-specific integrase -
  G7038_RS00620 - 137884..139920 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=427674 G7038_RS00605 WP_005725039.1 134444..134944(+) (ssb) [Pasteurella multocida strain KVNON-213]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=427674 G7038_RS00605 WP_005725039.1 134444..134944(+) (ssb) [Pasteurella multocida strain KVNON-213]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTAGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47