Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   MYY_RS00260 Genome accession   NC_017769
Coordinates   40357..40593 (+) Length   78 a.a.
NCBI ID   WP_000939544.1    Uniprot ID   -
Organism   Streptococcus pneumoniae ST556     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 35357..45593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYY_RS11410 - 39050..39259 (+) 210 Protein_45 transposase -
  MYY_RS11415 - 39294..40091 (-) 798 Protein_46 transposase -
  MYY_RS00260 (MYY_0046) comW 40357..40593 (+) 237 WP_000939544.1 sigma(X)-activator ComW Regulator
  MYY_RS00265 (MYY_0047) - 40824..42110 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  MYY_RS00270 (MYY_0048) tadA 42311..42778 (+) 468 WP_000291879.1 tRNA adenosine(34) deaminase TadA -
  MYY_RS00275 (MYY_0049) - 42987..44129 (-) 1143 WP_000266852.1 tyrosine-type recombinase/integrase -
  MYY_RS00280 (MYY_0050) - 44248..44598 (-) 351 WP_001020945.1 hypothetical protein -
  MYY_RS00285 (MYY_0051) - 44652..44864 (-) 213 WP_014678321.1 hypothetical protein -
  MYY_RS00290 (MYY_0052) - 44886..45242 (-) 357 WP_000153672.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9667.10 Da        Isoelectric Point: 6.4701

>NTDB_id=42749 MYY_RS00260 WP_000939544.1 40357..40593(+) (comW) [Streptococcus pneumoniae ST556]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCHRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=42749 MYY_RS00260 WP_000939544.1 40357..40593(+) (comW) [Streptococcus pneumoniae ST556]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCATAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

78.205

100

0.782
  comW Streptococcus mitis NCTC 12261

77.922

98.718

0.769

Multiple sequence alignment