Detailed information NTG0427329

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: IF722_RS08020
• Genome accession: NZ_CP062360
• Coordinates: 1665919..1666521 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain NAS_AN_157
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1660919..1671521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF722_RS08000 (IF722_07955)	yajC	1662415..1662675 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
IF722_RS08005 (IF722_07960)	tgt	1662694..1663833 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
IF722_RS08010 (IF722_07965)	queA	1663856..1664881 (-)	1026	WP_072491713.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IF722_RS08015 (IF722_07970)	ruvB	1664883..1665887 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IF722_RS08020 (IF722_07975)	ruvA	1665919..1666521 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
IF722_RS08025 (IF722_07980)	-	1666535..1666990 (-)	456	WP_000368902.1	ACT domain-containing protein	-
IF722_RS08030 (IF722_07985)	obgE	1667003..1668295 (-)	1293	WP_072491712.1	GTPase ObgE	-
IF722_RS08035 (IF722_07990)	rpmA	1668518..1668802 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
IF722_RS08040 (IF722_07995)	-	1668814..1669134 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IF722_RS08045 (IF722_08000)	rplU	1669140..1669448 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
IF722_RS08050 (IF722_08005)	mreD	1669615..1670145 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
IF722_RS08055 (IF722_08010)	mreC	1670145..1670987 (-)	843	WP_031868768.1	rod shape-determining protein MreC	-
IF722_RS08060 (IF722_08015)	-	1671185..1671304 (-)	120	WP_000840603.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=427329 IF722_RS08020 WP_000271547.1 1665919..1666521(-) (ruvA) [Staphylococcus aureus strain NAS_AN_157]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=427329 IF722_RS08020 WP_000271547.1 1665919..1666521(-) (ruvA) [Staphylococcus aureus strain NAS_AN_157]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425