Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DSC_RS03870 Genome accession   NC_016147
Coordinates   864091..865149 (+) Length   352 a.a.
NCBI ID   WP_014159823.1    Uniprot ID   G7UPV6
Organism   Pseudoxanthomonas spadix BD-a59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 859091..870149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSC_RS03860 (DSC_04955) - 860668..861285 (-) 618 WP_014159821.1 hypothetical protein -
  DSC_RS03865 (DSC_04960) - 861396..863864 (-) 2469 WP_014159822.1 penicillin-binding protein 1A -
  DSC_RS03870 (DSC_04965) comM 864091..865149 (+) 1059 WP_014159823.1 pilus assembly protein PilM Machinery gene
  DSC_RS03875 (DSC_04970) - 865149..865856 (+) 708 WP_014159824.1 PilN domain-containing protein -
  DSC_RS03880 (DSC_04975) - 865853..866521 (+) 669 WP_014159825.1 type 4a pilus biogenesis protein PilO -
  DSC_RS03885 (DSC_04980) - 866518..867054 (+) 537 WP_014159826.1 pilus assembly protein PilP -
  DSC_RS03890 (DSC_04985) - 867069..868949 (+) 1881 WP_043290387.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37810.40 Da        Isoelectric Point: 4.4047

>NTDB_id=42731 DSC_RS03870 WP_014159823.1 864091..865149(+) (comM) [Pseudoxanthomonas spadix BD-a59]
MGLIPKSQSSLIGVDISSTAVKLLQLSRVGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRAGTKTRNAAAA
VAGSAVITKIIPMPAELDENEMEAQIELEAVNYIPYPIEEVNLDFEVLGPLPSNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALLAGDLPVPHDGVVALVDIGATMTTLNVIRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQIVLAGGCAALTGLPEMVEEQLGVSTVVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=42731 DSC_RS03870 WP_014159823.1 864091..865149(+) (comM) [Pseudoxanthomonas spadix BD-a59]
GTGGGGCTCATCCCGAAAAGTCAGTCCTCGCTGATCGGCGTGGACATCAGCTCGACTGCGGTCAAGCTGTTGCAGTTGTC
GCGGGTCGGCAATCGTTTCCGCGTGGAACACTACGCCGTGGAGCCGCTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAGGCCATCCGCCGTGCGGTGACCCGGGCCGGAACCAAGACCAGGAATGCCGCCGCTGCA
GTGGCCGGTTCGGCGGTGATCACCAAGATCATCCCGATGCCCGCCGAGCTGGACGAGAACGAGATGGAAGCCCAGATCGA
GCTCGAGGCAGTCAACTACATTCCATATCCCATCGAGGAAGTGAACCTGGATTTCGAGGTGCTCGGGCCGCTGCCCAGCA
ACCCGGAAATGGTCCAGGTTCTGCTGGCCGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGACTGACCGCCAAGGTCATGGACGTGGAGGCCTTTGCGGTCGAGAACGCTTTTGCGCTGCTGGCGGGCGATCTGCCGGT
GCCGCATGACGGCGTGGTCGCGCTGGTGGACATCGGTGCCACCATGACCACCCTCAACGTGATCCGCAGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTCATGCGTCGCTATGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGGAGTGAATTCAATCGGGTCGACCAGATCGTCCTGGCCGGCG
GTTGCGCGGCCCTGACAGGCCTGCCGGAGATGGTGGAGGAGCAGCTCGGCGTGTCGACCGTGGTCGCCAATCCGCTGGCG
CAGATGACCCTGGGTCCACGCGTGCAGGCGCATGCGCTGGCGCAGGATGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
CCTGCGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7UPV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

45.042

100

0.452

Multiple sequence alignment