Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   SMULJ23_RS07400 Genome accession   NC_017768
Coordinates   1530324..1530980 (+) Length   218 a.a.
NCBI ID   WP_002276866.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1525324..1535980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS07370 (SMULJ23_1442) - 1525560..1525814 (-) 255 WP_002262064.1 DUF3165 family protein -
  SMULJ23_RS07375 (SMULJ23_1443) typA 1525843..1527687 (-) 1845 WP_014678161.1 translational GTPase TypA -
  SMULJ23_RS07380 (SMULJ23_1445) - 1527920..1528309 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  SMULJ23_RS07385 (SMULJ23_1446) - 1528319..1529290 (-) 972 WP_014678163.1 ROK family glucokinase -
  SMULJ23_RS07390 (SMULJ23_1447) - 1529283..1529489 (-) 207 WP_002262060.1 YqgQ family protein -
  SMULJ23_RS07395 (SMULJ23_1448) dpr 1529696..1530223 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  SMULJ23_RS07400 (SMULJ23_1449) cclA/cilC 1530324..1530980 (+) 657 WP_002276866.1 A24 family peptidase Machinery gene
  SMULJ23_RS07405 (SMULJ23_1450) trpA 1531217..1531999 (-) 783 WP_002284953.1 tryptophan synthase subunit alpha -
  SMULJ23_RS07410 (SMULJ23_1451) trpB 1532003..1533214 (-) 1212 WP_002277618.1 tryptophan synthase subunit beta -
  SMULJ23_RS07415 (SMULJ23_1452) - 1533211..1533792 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  SMULJ23_RS07420 (SMULJ23_1453) trpC 1533779..1534546 (-) 768 WP_002274959.1 indole-3-glycerol phosphate synthase TrpC -
  SMULJ23_RS07425 (SMULJ23_1454) trpD 1534539..1535546 (-) 1008 WP_014678164.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24885.12 Da        Isoelectric Point: 8.5688

>NTDB_id=42716 SMULJ23_RS07400 WP_002276866.1 1530324..1530980(+) (cclA/cilC) [Streptococcus mutans LJ23]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKYKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=42716 SMULJ23_RS07400 WP_002276866.1 1530324..1530980(+) (cclA/cilC) [Streptococcus mutans LJ23]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTGATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGTACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

43.256

98.624

0.427

  cclA/cilC Streptococcus mitis NCTC 12261

42.326

98.624

0.417

  cclA/cilC Streptococcus pneumoniae Rx1

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae D39

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae R6

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae TIGR4

41.784

97.706

0.408