Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SMULJ23_RS06895 Genome accession   NC_017768
Coordinates   1424088..1425026 (-) Length   312 a.a.
NCBI ID   WP_014678124.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1419088..1430026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS06875 (SMULJ23_1342) prsA 1419617..1420618 (-) 1002 WP_014678121.1 peptidylprolyl isomerase PrsA -
  SMULJ23_RS06880 (SMULJ23_1343) - 1420680..1421387 (-) 708 WP_002273046.1 O-methyltransferase -
  SMULJ23_RS06885 (SMULJ23_1344) - 1421437..1422054 (-) 618 WP_014678122.1 HAD-IA family hydrolase -
  SMULJ23_RS06890 (SMULJ23_1345) pepF 1422267..1424066 (-) 1800 WP_014678123.1 oligoendopeptidase F Regulator
  SMULJ23_RS06895 (SMULJ23_1346) coiA 1424088..1425026 (-) 939 WP_014678124.1 competence protein CoiA family protein Machinery gene
  SMULJ23_RS06900 (SMULJ23_1347) - 1425333..1426226 (-) 894 WP_002294969.1 alpha/beta hydrolase -
  SMULJ23_RS06905 (SMULJ23_1348) - 1426332..1426613 (-) 282 WP_002269717.1 hypothetical protein -
  SMULJ23_RS10435 - 1426698..1426825 (+) 128 Protein_1344 transcriptional regulator -
  SMULJ23_RS06910 (SMULJ23_1349) - 1426858..1427826 (-) 969 WP_014678125.1 zinc-binding dehydrogenase -
  SMULJ23_RS06915 (SMULJ23_1350) - 1427954..1429327 (+) 1374 WP_002280656.1 PLP-dependent aminotransferase family protein -
  SMULJ23_RS06920 (SMULJ23_1351) - 1429417..1429917 (-) 501 WP_014678126.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36708.10 Da        Isoelectric Point: 8.9146

>NTDB_id=42709 SMULJ23_RS06895 WP_014678124.1 1424088..1425026(-) (coiA) [Streptococcus mutans LJ23]
MLAARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKKGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQVNGYQVLWLLGEKLWLDRRLSSLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=42709 SMULJ23_RS06895 WP_014678124.1 1424088..1425026(-) (coiA) [Streptococcus mutans LJ23]
ATGTTAGCTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCGCCTGTACGTCTCAAAAAAGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAACGAACGCAGGCCTATCAGGTCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CCTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.926

99.038

0.465

  coiA Streptococcus pneumoniae Rx1

45.955

99.038

0.455

  coiA Streptococcus pneumoniae D39

45.955

99.038

0.455

  coiA Streptococcus pneumoniae R6

45.955

99.038

0.455

  coiA Streptococcus pneumoniae TIGR4

45.631

99.038

0.452

  coiA Lactococcus lactis subsp. cremoris KW2

39.077

100

0.407


Multiple sequence alignment