Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   G8B42_RS00680 Genome accession   NZ_CP049690
Coordinates   106587..107621 (+) Length   344 a.a.
NCBI ID   WP_011054115.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ABC208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101587..112621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B42_RS00670 (G8B42_00670) - 105255..105620 (+) 366 WP_002986560.1 DUF1033 family protein -
  G8B42_RS00675 (G8B42_00675) comYA 105713..106651 (+) 939 WP_002987773.1 competence type IV pilus ATPase ComGA Machinery gene
  G8B42_RS00680 (G8B42_00680) comYB 106587..107621 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  G8B42_RS00685 (G8B42_00685) comYC 107623..107949 (+) 327 WP_011528161.1 competence type IV pilus major pilin ComGC Machinery gene
  G8B42_RS00690 (G8B42_00690) comGD 107924..108352 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  G8B42_RS00695 (G8B42_00695) comGE 108309..108593 (+) 285 WP_011528162.1 competence type IV pilus minor pilin ComGE -
  G8B42_RS00700 (G8B42_00700) comYF 108586..109020 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  G8B42_RS00705 (G8B42_00705) comGG 109004..109330 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  G8B42_RS00710 (G8B42_00710) comYH 109428..110381 (+) 954 WP_021299429.1 class I SAM-dependent methyltransferase Machinery gene
  G8B42_RS00715 (G8B42_00715) - 110440..111636 (+) 1197 WP_011528164.1 acetate kinase -
  G8B42_RS00720 (G8B42_00720) - 111823..112131 (+) 309 WP_011528165.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39676.15 Da        Isoelectric Point: 9.7085

>NTDB_id=426842 G8B42_RS00680 WP_011054115.1 106587..107621(+) (comYB) [Streptococcus pyogenes strain ABC208]
MISFLRQDISIPSKLSLKKLSSKHQHKFIQLLANLLSTGFSFAEVIAFLKRSQLLQLDYVLKMEESLLKGQGLADMLSGL
GFSDAILTQISLADRHGNIETTLVAIQHYLNQMARIRRKTVEVITYPLILLLFLFVMMLGLRRYLVPQLETQNQITYFLN
HFPAFFIGFCSGLILLFGMVWLRWRSQSRLKLYSRLSRYPFLGKLLKQYLTSYYAREWGTLIGQGLDLMTILDIMAIEKS
SLMKELAEDIRMSLLEGQAFHIKVATYPFFKKELSLMIEYGEIKSKLGAELEIYAQESWEQFFSQLYQVTQLIQPAIFLV
VAVTIVMIYAAILLPIYQNMGGIF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=426842 G8B42_RS00680 WP_011054115.1 106587..107621(+) (comYB) [Streptococcus pyogenes strain ABC208]
TTGATCAGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAGTAAACATCAGCATAA
ATTCATTCAATTACTAGCTAATCTTTTATCTACAGGATTTAGCTTCGCAGAGGTTATTGCTTTTTTAAAAAGAAGCCAGT
TGCTTCAGCTAGATTATGTTCTTAAAATGGAAGAGTCTTTATTAAAAGGACAAGGCTTAGCAGATATGTTGTCGGGTTTA
GGTTTTTCAGATGCTATTCTTACTCAAATTAGTTTAGCTGATAGACACGGTAATATTGAAACAACATTAGTAGCGATTCA
ACATTACTTGAACCAAATGGCAAGGATCAGACGAAAAACTGTTGAAGTTATCACCTATCCTCTTATTCTTTTACTTTTTC
TTTTTGTGATGATGCTAGGGTTGAGACGTTATTTAGTCCCTCAATTAGAAACTCAAAATCAGATAACTTACTTTCTTAAC
CATTTTCCTGCCTTCTTTATAGGTTTTTGCTCAGGTCTTATTTTGTTGTTCGGGATGGTATGGCTACGATGGCGATCTCA
AAGCCGCTTGAAACTCTATAGTCGGCTAAGCCGTTATCCTTTTTTAGGTAAACTGTTAAAACAATACTTAACTAGTTATT
ATGCTAGAGAATGGGGTACGTTAATAGGTCAAGGTCTTGATTTGATGACTATTTTAGACATTATGGCCATTGAGAAATCC
TCACTAATGAAAGAATTAGCTGAGGACATCAGAATGAGTCTGCTTGAAGGGCAAGCCTTTCACATTAAAGTAGCTACCTA
CCCTTTTTTTAAAAAAGAATTAAGTTTAATGATTGAATACGGTGAAATCAAATCGAAACTGGGGGCTGAGTTGGAAATCT
ATGCCCAGGAAAGCTGGGAACAATTTTTTAGTCAGCTTTATCAAGTGACACAACTTATTCAACCAGCTATTTTTTTAGTA
GTTGCTGTGACAATCGTCATGATTTATGCGGCAATCCTATTACCAATTTACCAAAATATGGGAGGTATTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.982

98.547

0.532
  comYB Streptococcus mutans UA159

53.982

98.547

0.532
  comYB Streptococcus gordonii str. Challis substr. CH1

50.588

98.837

0.5
  comGB/cglB Streptococcus mitis NCTC 12261

47.619

97.674

0.465
  comGB/cglB Streptococcus mitis SK321

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae Rx1

45.646

96.802

0.442
  comGB/cglB Streptococcus pneumoniae D39

45.646

96.802

0.442
  comGB/cglB Streptococcus pneumoniae R6

45.646

96.802

0.442
  comGB/cglB Streptococcus pneumoniae TIGR4

45.646

96.802

0.442
  comGB Lactococcus lactis subsp. cremoris KW2

42.769

94.477

0.404