Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2750_RS07945 Genome accession   NZ_CP049682
Coordinates   1550366..1550821 (-) Length   151 a.a.
NCBI ID   WP_112205419.1    Uniprot ID   A0A2Z4JPG1
Organism   Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1545366..1555821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2750_RS07930 (C2750_07935) ilvA 1547097..1548617 (+) 1521 WP_112205413.1 threonine ammonia-lyase, biosynthetic -
  C2750_RS07935 (C2750_07940) - 1548619..1549527 (+) 909 WP_112314244.1 5'-nucleotidase -
  C2750_RS07940 (C2750_07945) queF 1549532..1550359 (+) 828 WP_112205417.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2750_RS07945 (C2750_07950) ssb 1550366..1550821 (-) 456 WP_112205419.1 single-stranded DNA-binding protein Machinery gene
  C2750_RS07950 (C2750_07955) - 1550886..1552052 (-) 1167 WP_112205420.1 MFS transporter -
  C2750_RS07955 (C2750_07960) uvrA 1552089..1554974 (+) 2886 WP_112205422.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16269.09 Da        Isoelectric Point: 5.9444

>NTDB_id=426533 C2750_RS07945 WP_112205419.1 1550366..1550821(-) (ssb) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVSETMQMLGGKPVGGSEGGESYSRSKSAESSAPAASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=426533 C2750_RS07945 WP_112205419.1 1550366..1550821(-) (ssb) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
ATGGCTTCGGTAAATAAAGTCATCATTGTGGGTAATGTAGGACGTGACCCAGAAACGCGTTATATGCCTAGTGGCGACGC
AGTAACCAATATCTCAGTAGCGACTTCAGATCGTTACAAAGACAAGCAAACTGGTGAAATGAAAGAGACCACTGAATGGC
ATCGTGTTGCATTCTTTGGCAAGCTTGCAGAGATTGCAGGCCAGTATTTGAAAAAAGGTTCACAAGTCTATGTTGAGGGT
CGCTTACGCACTCGCAAGTGGACTGATGCGAGTGGTCAAGAAAAATACTCTACAGAGATCGTTTCTGAAACCATGCAAAT
GTTGGGTGGTAAGCCAGTAGGTGGTAGCGAAGGTGGCGAGAGCTACAGTCGCTCGAAGTCTGCTGAATCATCTGCACCAG
CAGCGTCCTCTAATGCTGCTTCCTTAGGCGCAATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4JPG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.517
  ssb Neisseria meningitidis MC58

44.828

100

0.517