Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C2750_RS06005 | Genome accession | NZ_CP049682 |
| Coordinates | 1163306..1163740 (+) | Length | 144 a.a. |
| NCBI ID | WP_215333750.1 | Uniprot ID | - |
| Organism | Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1125999..1165999 | 1163306..1163740 | within | 0 |
Gene organization within MGE regions
Location: 1125999..1165999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2750_RS05770 (C2750_05780) | - | 1125999..1126958 (-) | 960 | WP_215333661.1 | hypothetical protein | - |
| C2750_RS05775 (C2750_05785) | - | 1126955..1127398 (-) | 444 | WP_215333663.1 | GNAT family N-acetyltransferase | - |
| C2750_RS05780 (C2750_05790) | - | 1127404..1127616 (-) | 213 | WP_215333665.1 | hypothetical protein | - |
| C2750_RS05785 (C2750_05795) | - | 1127609..1128112 (-) | 504 | WP_215333667.1 | hypothetical protein | - |
| C2750_RS05790 (C2750_05800) | - | 1128112..1128600 (-) | 489 | WP_215333669.1 | lysozyme | - |
| C2750_RS05795 (C2750_05805) | - | 1128597..1128800 (-) | 204 | WP_215333671.1 | hypothetical protein | - |
| C2750_RS05800 (C2750_05810) | - | 1128800..1129006 (-) | 207 | WP_215333673.1 | hypothetical protein | - |
| C2750_RS05805 (C2750_05815) | - | 1129009..1129245 (-) | 237 | WP_215333675.1 | hypothetical protein | - |
| C2750_RS08900 (C2750_05820) | - | 1129220..1130590 (-) | 1371 | WP_342356922.1 | reverse transcriptase/maturase family protein | - |
| C2750_RS05815 (C2750_05825) | avd | 1130494..1130862 (-) | 369 | WP_215333677.1 | diversity-generating retroelement protein Avd | - |
| C2750_RS05820 (C2750_05830) | - | 1130879..1131925 (-) | 1047 | WP_215333679.1 | hypothetical protein | - |
| C2750_RS05825 (C2750_05835) | - | 1131938..1132939 (-) | 1002 | WP_215333680.1 | hypothetical protein | - |
| C2750_RS05830 (C2750_05840) | - | 1133014..1141458 (-) | 8445 | WP_215333682.1 | hypothetical protein | - |
| C2750_RS05835 (C2750_05845) | - | 1141451..1143595 (-) | 2145 | WP_215333684.1 | transglycosylase SLT domain-containing protein | - |
| C2750_RS05840 (C2750_05850) | - | 1143667..1144242 (-) | 576 | WP_215333686.1 | hypothetical protein | - |
| C2750_RS08855 | - | 1144301..1146607 (-) | 2307 | WP_244973648.1 | hypothetical protein | - |
| C2750_RS05850 (C2750_05860) | - | 1146607..1147275 (-) | 669 | WP_215333688.1 | hypothetical protein | - |
| C2750_RS05855 (C2750_05865) | - | 1147342..1147530 (-) | 189 | WP_215333690.1 | hypothetical protein | - |
| C2750_RS05860 (C2750_05870) | - | 1147544..1148008 (-) | 465 | WP_215333692.1 | Bbp16 family capsid cement protein | - |
| C2750_RS05865 (C2750_05875) | - | 1148077..1149081 (-) | 1005 | WP_215333694.1 | major capsid protein | - |
| C2750_RS05870 (C2750_05880) | - | 1149104..1149796 (-) | 693 | WP_215333696.1 | protease | - |
| C2750_RS05875 (C2750_05885) | - | 1149756..1150097 (-) | 342 | WP_215333698.1 | endopeptidase | - |
| C2750_RS05880 (C2750_05890) | gp10 | 1150136..1150450 (-) | 315 | WP_215333700.1 | capsid staple protein | - |
| C2750_RS05885 (C2750_05895) | - | 1150460..1150729 (-) | 270 | WP_215333702.1 | hypothetical protein | - |
| C2750_RS05890 (C2750_05900) | - | 1150742..1152451 (-) | 1710 | WP_215333704.1 | portal protein | - |
| C2750_RS05895 (C2750_05905) | - | 1152456..1153049 (-) | 594 | WP_215333706.1 | hypothetical protein | - |
| C2750_RS05900 (C2750_05910) | - | 1153046..1153411 (-) | 366 | WP_215333708.1 | hypothetical protein | - |
| C2750_RS05905 (C2750_05915) | - | 1153412..1153744 (-) | 333 | WP_215333710.1 | hypothetical protein | - |
| C2750_RS05910 (C2750_05920) | - | 1153741..1154259 (-) | 519 | WP_215333712.1 | hypothetical protein | - |
| C2750_RS05915 (C2750_05925) | - | 1154321..1154494 (-) | 174 | WP_215333714.1 | hypothetical protein | - |
| C2750_RS05920 (C2750_05930) | - | 1154491..1155813 (-) | 1323 | WP_215333716.1 | terminase family protein | - |
| C2750_RS05925 (C2750_05935) | - | 1155806..1156069 (-) | 264 | WP_215333718.1 | hypothetical protein | - |
| C2750_RS05930 (C2750_05940) | - | 1156077..1156346 (-) | 270 | WP_215333720.1 | hypothetical protein | - |
| C2750_RS05935 (C2750_05945) | - | 1156336..1156887 (-) | 552 | WP_215333722.1 | recombination protein NinG | - |
| C2750_RS05940 (C2750_05950) | - | 1156884..1157312 (-) | 429 | WP_215333724.1 | recombination protein NinB | - |
| C2750_RS05945 | - | 1157526..1158362 (-) | 837 | WP_215333726.1 | YdaU family protein | - |
| C2750_RS05950 (C2750_05960) | - | 1158359..1158655 (-) | 297 | WP_215333728.1 | hypothetical protein | - |
| C2750_RS05955 (C2750_05965) | - | 1158652..1158963 (-) | 312 | WP_215333730.1 | CII family transcriptional regulator | - |
| C2750_RS05960 (C2750_05970) | - | 1158956..1159192 (-) | 237 | WP_215333732.1 | YdaS family helix-turn-helix protein | - |
| C2750_RS05965 (C2750_05975) | - | 1159267..1159893 (+) | 627 | WP_215333734.1 | S24 family peptidase | - |
| C2750_RS05970 (C2750_05980) | - | 1159893..1160126 (+) | 234 | WP_215333736.1 | hypothetical protein | - |
| C2750_RS05975 (C2750_05985) | - | 1160503..1160655 (+) | 153 | WP_215333738.1 | hypothetical protein | - |
| C2750_RS05980 (C2750_05990) | bet | 1160679..1161422 (+) | 744 | WP_215333740.1 | phage recombination protein Bet | - |
| C2750_RS05985 (C2750_05995) | - | 1161422..1162057 (+) | 636 | WP_215333742.1 | lambda exonuclease family protein | - |
| C2750_RS05990 (C2750_06000) | - | 1162078..1162407 (+) | 330 | WP_215333744.1 | hypothetical protein | - |
| C2750_RS05995 (C2750_06005) | - | 1162413..1162634 (+) | 222 | WP_215333746.1 | hypothetical protein | - |
| C2750_RS06000 (C2750_06010) | - | 1162631..1163062 (+) | 432 | WP_215333748.1 | dATP/dGTP diphosphohydrolase domain-containing protein | - |
| C2750_RS06005 (C2750_06015) | ssb | 1163306..1163740 (+) | 435 | WP_215333750.1 | single-stranded DNA-binding protein | Machinery gene |
| C2750_RS06010 (C2750_06020) | - | 1163903..1164238 (+) | 336 | WP_215333752.1 | hypothetical protein | - |
| C2750_RS06015 (C2750_06025) | - | 1164238..1164780 (+) | 543 | WP_215333754.1 | hypothetical protein | - |
| C2750_RS06020 (C2750_06030) | - | 1164780..1164980 (+) | 201 | WP_215333756.1 | DUF4224 domain-containing protein | - |
| C2750_RS06025 (C2750_06035) | - | 1164980..1165999 (+) | 1020 | WP_244973649.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 15605.55 Da Isoelectric Point: 5.2880
>NTDB_id=426529 C2750_RS06005 WP_215333750.1 1163306..1163740(+) (ssb) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
MASVNKVIVVGNLGKDPETRYMPSGDAVCNFSVATTDKWKDKQSGETKEATEWHRISAFGKLAEICGQYLKKGSQGYFEG
KLQTRKFTDAAGIEKYSTEIRLETMQMLGGKPSGGAEVPEGYSKTQQSPAPEGGLGAMDDDIPF
MASVNKVIVVGNLGKDPETRYMPSGDAVCNFSVATTDKWKDKQSGETKEATEWHRISAFGKLAEICGQYLKKGSQGYFEG
KLQTRKFTDAAGIEKYSTEIRLETMQMLGGKPSGGAEVPEGYSKTQQSPAPEGGLGAMDDDIPF
Nucleotide
Download Length: 435 bp
>NTDB_id=426529 C2750_RS06005 WP_215333750.1 1163306..1163740(+) (ssb) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
ATGGCATCAGTTAATAAAGTAATCGTAGTAGGTAATTTGGGCAAAGATCCAGAAACGCGTTATATGCCATCTGGCGACGC
GGTATGTAATTTCAGCGTAGCGACTACCGACAAATGGAAAGACAAACAATCAGGCGAAACCAAAGAGGCTACTGAATGGC
ATCGTATTTCTGCCTTTGGAAAATTGGCTGAGATCTGCGGTCAATACCTAAAAAAAGGTAGCCAAGGTTACTTTGAAGGA
AAACTACAAACTAGAAAGTTTACGGACGCTGCTGGTATTGAAAAGTATTCCACAGAGATTAGATTAGAAACAATGCAAAT
GCTTGGCGGTAAACCATCTGGCGGAGCTGAAGTACCAGAGGGCTATAGCAAGACTCAGCAATCCCCAGCACCAGAAGGCG
GCCTTGGCGCAATGGATGATGACATTCCTTTCTGA
ATGGCATCAGTTAATAAAGTAATCGTAGTAGGTAATTTGGGCAAAGATCCAGAAACGCGTTATATGCCATCTGGCGACGC
GGTATGTAATTTCAGCGTAGCGACTACCGACAAATGGAAAGACAAACAATCAGGCGAAACCAAAGAGGCTACTGAATGGC
ATCGTATTTCTGCCTTTGGAAAATTGGCTGAGATCTGCGGTCAATACCTAAAAAAAGGTAGCCAAGGTTACTTTGAAGGA
AAACTACAAACTAGAAAGTTTACGGACGCTGCTGGTATTGAAAAGTATTCCACAGAGATTAGATTAGAAACAATGCAAAT
GCTTGGCGGTAAACCATCTGGCGGAGCTGAAGTACCAGAGGGCTATAGCAAGACTCAGCAATCCCCAGCACCAGAAGGCG
GCCTTGGCGCAATGGATGATGACATTCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48.588 |
100 |
0.597 |
| ssb | Neisseria gonorrhoeae MS11 |
44.828 |
100 |
0.542 |
| ssb | Neisseria meningitidis MC58 |
53.906 |
88.889 |
0.479 |
| ssb | Glaesserella parasuis strain SC1401 |
58.261 |
79.861 |
0.465 |