Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   G6543_RS16565 Genome accession   NZ_CP049363
Coordinates   3498329..3499147 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493329..3504147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6543_RS16550 pilE 3493546..3493971 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  G6543_RS16555 pilY2 3493968..3494450 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  G6543_RS16560 pilY1 3494463..3498317 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  G6543_RS16565 pilX 3498329..3499147 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G6543_RS16570 pilW 3499144..3500145 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  G6543_RS16575 pilV 3500146..3500706 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  G6543_RS16580 fimU 3500700..3501173 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G6543_RS16585 ispH 3501343..3502293 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G6543_RS16590 gmk 3502416..3503045 (+) 630 WP_000015937.1 guanylate kinase -
  G6543_RS16595 rpoZ 3503118..3503396 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  G6543_RS16600 - 3503435..3503564 (+) 130 Protein_3245 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=426325 G6543_RS16565 WP_000149374.1 3498329..3499147(-) (pilX) [Acinetobacter baumannii strain ATCC 17978]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=426325 G6543_RS16565 WP_000149374.1 3498329..3499147(-) (pilX) [Acinetobacter baumannii strain ATCC 17978]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993