Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   G6543_RS16580 Genome accession   NZ_CP049363
Coordinates   3500700..3501173 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3495700..3506173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6543_RS16565 pilX 3498329..3499147 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G6543_RS16570 pilW 3499144..3500145 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  G6543_RS16575 pilV 3500146..3500706 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  G6543_RS16580 fimU 3500700..3501173 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G6543_RS16585 ispH 3501343..3502293 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G6543_RS16590 gmk 3502416..3503045 (+) 630 WP_000015937.1 guanylate kinase -
  G6543_RS16595 rpoZ 3503118..3503396 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  G6543_RS16600 - 3503435..3503564 (+) 130 Protein_3245 hypothetical protein -
  G6543_RS16605 - 3503604..3505709 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=426328 G6543_RS16580 WP_001214061.1 3500700..3501173(-) (fimU) [Acinetobacter baumannii strain ATCC 17978]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=426328 G6543_RS16580 WP_001214061.1 3500700..3501173(-) (fimU) [Acinetobacter baumannii strain ATCC 17978]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987