Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   G6543_RS16570 Genome accession   NZ_CP049363
Coordinates   3499144..3500145 (-) Length   333 a.a.
NCBI ID   WP_000079200.1    Uniprot ID   A0A9P3CZV1
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3494144..3505145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6543_RS16560 pilY1 3494463..3498317 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  G6543_RS16565 pilX 3498329..3499147 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G6543_RS16570 pilW 3499144..3500145 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  G6543_RS16575 pilV 3500146..3500706 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  G6543_RS16580 fimU 3500700..3501173 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G6543_RS16585 ispH 3501343..3502293 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G6543_RS16590 gmk 3502416..3503045 (+) 630 WP_000015937.1 guanylate kinase -
  G6543_RS16595 rpoZ 3503118..3503396 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  G6543_RS16600 - 3503435..3503564 (+) 130 Protein_3245 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35829.53 Da        Isoelectric Point: 5.7207

>NTDB_id=426326 G6543_RS16570 WP_000079200.1 3499144..3500145(-) (pilW) [Acinetobacter baumannii strain ATCC 17978]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=426326 G6543_RS16570 WP_000079200.1 3499144..3500145(-) (pilW) [Acinetobacter baumannii strain ATCC 17978]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997