Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G6543_RS16550 Genome accession   NZ_CP049363
Coordinates   3493546..3493971 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3488546..3498971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6543_RS16520 - 3489074..3490108 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  G6543_RS16525 - 3490223..3491164 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  G6543_RS16530 rplS 3491217..3491585 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  G6543_RS16535 trmD 3491794..3492534 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G6543_RS16540 rimM 3492580..3493128 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  G6543_RS16545 rpsP 3493148..3493399 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  G6543_RS16550 pilE 3493546..3493971 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  G6543_RS16555 pilY2 3493968..3494450 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  G6543_RS16560 pilY1 3494463..3498317 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=426322 G6543_RS16550 WP_000788342.1 3493546..3493971(-) (pilE) [Acinetobacter baumannii strain ATCC 17978]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=426322 G6543_RS16550 WP_000788342.1 3493546..3493971(-) (pilE) [Acinetobacter baumannii strain ATCC 17978]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518