Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FE795_RS16510 Genome accession   NZ_CP049362
Coordinates   3613962..3614474 (-) Length   170 a.a.
NCBI ID   WP_059318076.1    Uniprot ID   -
Organism   Alcaligenes ammonioxydans strain HO-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3608962..3619474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE795_RS16485 (FE795_16520) - 3609005..3609745 (+) 741 WP_131071083.1 TSUP family transporter -
  FE795_RS16490 (FE795_16525) - 3609841..3610548 (+) 708 WP_003805280.1 GntR family transcriptional regulator -
  FE795_RS17380 - 3610695..3610820 (-) 126 WP_268885612.1 hypothetical protein -
  FE795_RS16495 (FE795_16530) - 3610869..3611417 (-) 549 WP_059318077.1 ferritin-like domain-containing protein -
  FE795_RS16500 (FE795_16535) - 3611962..3612504 (+) 543 WP_131071084.1 Chromate resistance protein ChrB -
  FE795_RS16505 (FE795_16540) - 3612488..3613711 (+) 1224 WP_003805288.1 MFS transporter -
  FE795_RS16510 (FE795_16545) ssb 3613962..3614474 (-) 513 WP_059318076.1 single-stranded DNA-binding protein Machinery gene
  FE795_RS16515 (FE795_16550) - 3614733..3615944 (-) 1212 WP_003805292.1 MFS transporter -
  FE795_RS16520 (FE795_16555) uvrA 3616056..3619019 (+) 2964 WP_131071870.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18611.71 Da        Isoelectric Point: 5.3488

>NTDB_id=426289 FE795_RS16510 WP_059318076.1 3613962..3614474(-) (ssb) [Alcaligenes ammonioxydans strain HO-1]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGGEMGGGSMGGGEYGGGAPAPQRAQRPAPAQQAPQQAPRNPAPMSDN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=426289 FE795_RS16510 WP_059318076.1 3613962..3614474(-) (ssb) [Alcaligenes ammonioxydans strain HO-1]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGTGACCCAGAAGTACGCTACAGCGCGGAAGGTTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAACGCCGCGAGGAAACGGAATGGC
ACCGCGTGGTGTTCTACAACCGCCTGGCTGAAATTGCCGGTGAGTACCTTCGCAAAGGCCGTCCCGTCTACGTGGAAGGT
CGTCTGCGTACCCGTAAATGGACGGGTCAGGACGGCCAGGAACGCTTCACGACTGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGTCGTGATGGTGGCGGCGAGATGGGTGGTGGCAGCATGGGCGGTGGCGAATACGGCGGTGGTGCGCCGGCTC
CTCAGCGCGCTCAGCGTCCTGCTCCTGCGCAGCAGGCACCGCAACAGGCCCCCCGCAACCCCGCACCCATGTCGGATAAT
CTGGCCGATATGGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.198

100

0.559
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.535
  ssb Neisseria gonorrhoeae MS11

50.847

100

0.529
  ssb Neisseria meningitidis MC58

49.425

100

0.506