Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GYO_RS43005 Genome accession   NC_016047
Coordinates   4190401..4190919 (-) Length   172 a.a.
NCBI ID   WP_014115887.1    Uniprot ID   A0A9Q4E2B6
Organism   Bacillus spizizenii TU-B-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4185401..4195919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS42975 (GYO_4498) - 4185908..4187263 (+) 1356 WP_014115882.1 MFS transporter -
  GYO_RS42980 (GYO_4499) - 4187294..4187851 (-) 558 WP_014115883.1 sugar O-acetyltransferase -
  GYO_RS42985 (GYO_4500) - 4187869..4188249 (-) 381 WP_014115884.1 VOC family protein -
  GYO_RS42990 (GYO_4501) - 4188305..4189240 (-) 936 WP_014115885.1 LacI family DNA-binding transcriptional regulator -
  GYO_RS42995 (GYO_4502) xth 4189299..4190057 (-) 759 WP_014115886.1 exodeoxyribonuclease III -
  GYO_RS43000 rpsR 4190118..4190357 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  GYO_RS43005 (GYO_4503) ssbA 4190401..4190919 (-) 519 WP_014115887.1 single-stranded DNA-binding protein SsbA Machinery gene
  GYO_RS43010 (GYO_4504) rpsF 4190960..4191247 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  GYO_RS43015 (GYO_4505) ychF 4191358..4192459 (-) 1102 Protein_4161 redox-regulated ATPase YchF -
  GYO_RS43020 (GYO_4507) - 4192586..4194589 (-) 2004 WP_014115891.1 molybdopterin-dependent oxidoreductase -
  GYO_RS43025 (GYO_4508) - 4194640..4194846 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18714.29 Da        Isoelectric Point: 4.7621

>NTDB_id=42626 GYO_RS43005 WP_014115887.1 4190401..4190919(-) (ssbA) [Bacillus spizizenii TU-B-10]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=42626 GYO_RS43005 WP_014115887.1 4190401..4190919(-) (ssbA) [Bacillus spizizenii TU-B-10]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAAACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment