Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5S32_RS16365 Genome accession   NZ_CP049332
Coordinates   296587..297060 (+) Length   157 a.a.
NCBI ID   WP_165313158.1    Uniprot ID   A0A6G7CNE3
Organism   Vibrio ziniensis strain ZWAL4003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 291587..302060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS16345 (G5S32_16345) - 292429..293427 (+) 999 WP_165313153.1 patatin-like phospholipase family protein -
  G5S32_RS16350 (G5S32_16350) - 294237..294836 (-) 600 WP_165313155.1 hypothetical protein -
  G5S32_RS16355 (G5S32_16355) - 295383..296189 (+) 807 WP_165313157.1 hypothetical protein -
  G5S32_RS16360 (G5S32_16360) - 296293..296424 (-) 132 WP_246201161.1 DUF968 domain-containing protein -
  G5S32_RS16365 (G5S32_16365) ssb 296587..297060 (+) 474 WP_165313158.1 single-stranded DNA-binding protein Machinery gene
  G5S32_RS16370 (G5S32_16370) - 297134..297319 (+) 186 WP_165313159.1 hypothetical protein -
  G5S32_RS16375 (G5S32_16375) - 297298..298515 (+) 1218 WP_165313160.1 tyrosine-type recombinase/integrase -
  G5S32_RS16380 (G5S32_16380) - 299143..299859 (-) 717 WP_165313162.1 7-cyano-7-deazaguanine synthase -
  G5S32_RS16385 (G5S32_16385) - 300332..300541 (-) 210 WP_165313164.1 hypothetical protein -
  G5S32_RS16390 (G5S32_16390) - 300748..301764 (+) 1017 WP_165313166.1 IS110 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17599.77 Da        Isoelectric Point: 7.3574

>NTDB_id=426174 G5S32_RS16365 WP_165313158.1 296587..297060(+) (ssb) [Vibrio ziniensis strain ZWAL4003]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKSSGQQREKTEWHRVTLYGKLAEVSGEHLRKGSQVYI
EGQLQTRKWQDQSGQDRFSTEVVVQGYNGVMQMLGSKRDQGWGQPQQPSHNEPPMDFDDDIPLVPMFKPHRSLSLCV

Nucleotide


Download         Length: 474 bp        

>NTDB_id=426174 G5S32_RS16365 WP_165313158.1 296587..297060(+) (ssb) [Vibrio ziniensis strain ZWAL4003]
ATGGCTAGCCGTGGAGTAAACAAAGTCATCCTAGTAGGAAACTTAGGCAGTGATCCAGAGGTGCGTTATATGCCTTCTGG
TGGAGCTGTTGCCAACATCACTATAGCCACCAGCGAAACGTGGCGAGATAAATCGTCAGGTCAGCAACGCGAAAAAACAG
AGTGGCACCGAGTAACCCTGTACGGAAAGCTTGCTGAAGTCTCAGGTGAACACTTAAGAAAAGGTTCGCAAGTCTACATC
GAAGGTCAGCTACAAACTCGTAAATGGCAGGACCAATCAGGACAAGATCGATTTTCAACAGAGGTTGTAGTTCAGGGATA
CAACGGAGTGATGCAAATGCTAGGTAGTAAACGCGACCAAGGATGGGGACAGCCTCAGCAACCGTCACATAACGAGCCTC
CGATGGATTTCGATGATGATATTCCTCTGGTTCCAATGTTTAAACCGCATCGCTCACTTAGTCTGTGCGTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CNE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.186

100

0.803
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.548
  ssb Neisseria gonorrhoeae MS11

41.808

100

0.471
  ssb Neisseria meningitidis MC58

41.243

100

0.465