Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GYO_RS40095 Genome accession   NC_016047
Coordinates   3603916..3604605 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus spizizenii TU-B-10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598916..3609605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS40060 (GYO_3886) flgN 3599095..3599577 (-) 483 WP_014115348.1 flagellar protein FlgN -
  GYO_RS40065 (GYO_3887) flgM 3599592..3599858 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  GYO_RS40070 (GYO_3888) - 3599938..3600357 (-) 420 WP_014115350.1 TIGR03826 family flagellar region protein -
  GYO_RS40075 (GYO_3889) comFC 3600430..3601152 (-) 723 WP_014115351.1 ComF family protein Machinery gene
  GYO_RS40080 (GYO_3890) - 3601116..3601412 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  GYO_RS40085 (GYO_3891) comFA 3601481..3602863 (-) 1383 WP_080010142.1 ATP-dependent helicase ComFA Machinery gene
  GYO_RS40090 (GYO_3892) - 3602971..3603816 (-) 846 WP_014115354.1 DegV family protein -
  GYO_RS40095 (GYO_3893) degU 3603916..3604605 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GYO_RS40100 (GYO_3894) degS 3604688..3605845 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator
  GYO_RS40105 (GYO_3895) - 3606061..3606714 (+) 654 WP_014115356.1 YigZ family protein -
  GYO_RS40110 (GYO_3896) - 3606714..3607706 (+) 993 WP_041521082.1 LCP family protein -
  GYO_RS40115 (GYO_3897) - 3608449..3608898 (+) 450 WP_238528883.1 hypothetical protein -
  GYO_RS40120 (GYO_3898) - 3608951..3609406 (+) 456 WP_014115359.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=42617 GYO_RS40095 WP_003219701.1 3603916..3604605(-) (degU) [Bacillus spizizenii TU-B-10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=42617 GYO_RS40095 WP_003219701.1 3603916..3604605(-) (degU) [Bacillus spizizenii TU-B-10]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCCGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATCGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACCCGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment