Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GYO_RS40085 Genome accession   NC_016047
Coordinates   3601481..3602863 (-) Length   460 a.a.
NCBI ID   WP_080010142.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3596481..3607863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS40050 (GYO_3884) flgL 3596647..3597543 (-) 897 WP_014115346.1 flagellar hook-associated protein FlgL -
  GYO_RS40055 (GYO_3885) flgK 3597553..3599076 (-) 1524 WP_014115347.1 flagellar hook-associated protein FlgK -
  GYO_RS40060 (GYO_3886) flgN 3599095..3599577 (-) 483 WP_014115348.1 flagellar protein FlgN -
  GYO_RS40065 (GYO_3887) flgM 3599592..3599858 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  GYO_RS40070 (GYO_3888) - 3599938..3600357 (-) 420 WP_014115350.1 TIGR03826 family flagellar region protein -
  GYO_RS40075 (GYO_3889) comFC 3600430..3601152 (-) 723 WP_014115351.1 ComF family protein Machinery gene
  GYO_RS40080 (GYO_3890) - 3601116..3601412 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  GYO_RS40085 (GYO_3891) comFA 3601481..3602863 (-) 1383 WP_080010142.1 ATP-dependent helicase ComFA Machinery gene
  GYO_RS40090 (GYO_3892) - 3602971..3603816 (-) 846 WP_014115354.1 DegV family protein -
  GYO_RS40095 (GYO_3893) degU 3603916..3604605 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GYO_RS40100 (GYO_3894) degS 3604688..3605845 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator
  GYO_RS40105 (GYO_3895) - 3606061..3606714 (+) 654 WP_014115356.1 YigZ family protein -
  GYO_RS40110 (GYO_3896) - 3606714..3607706 (+) 993 WP_041521082.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52045.19 Da        Isoelectric Point: 9.7037

>NTDB_id=42616 GYO_RS40085 WP_080010142.1 3601481..3602863(-) (comFA) [Bacillus spizizenii TU-B-10]
MIVPAEKNISFSKELQQTLQSRHLLRTELPFSDKLIEWHIENGYVAAQNSISINKRGYKCNRCGQNDQRYFSFYLSSGKN
QLYCRSCVMMGRVSENVPLYSWIEEDEPNWPQIKLTWDGKLSSGQQKAANVLIDAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQCADISALYGGSDDKGCLSPLMISTTHQLLRYKGAFDVIIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPQELKRKTLNGQLYSVRIPARHHRKPLPEPRFLWCGNWKKKLYRNKIPLAVKR
WIEFHVKEGRPVFLFVPSVTVLEKAVACFKDVNCRAAAVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTIPKVQTGV
LGAESPIFTESALVQVAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNALAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=42616 GYO_RS40085 WP_080010142.1 3601481..3602863(-) (comFA) [Bacillus spizizenii TU-B-10]
CTGATTGTGCCAGCAGAAAAGAACATTTCTTTTTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGAAC
CGAACTCCCATTTTCCGATAAGTTGATTGAATGGCATATCGAAAATGGATATGTCGCTGCCCAAAACTCTATATCCATAA
ATAAACGGGGATATAAGTGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTATCTCTCATCTGGAAAGAAT
CAGCTATATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGAATGTTCCTTTATATTCGTGGATAGAGGAGGATGA
ACCAAACTGGCCGCAAATAAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTCTTAATTG
ATGCAATATCAAAAAAAGAAGAGCTCCTCATTTGGGCTGTTTGCGGCGCTGGCAAAACAGAGATGTTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGGTTGCGTGTATGTATTGCGACACCCCGCACCGATGTAGTATTAGAGCTTGCTCCTAGACT
CAAGGCTGCCTTTCAGTGTGCTGACATTTCAGCACTTTACGGAGGAAGTGATGACAAAGGCTGTTTATCTCCGCTTATGA
TTTCTACCACACATCAGCTTTTGCGATATAAAGGGGCATTCGACGTTATAATCATTGATGAAGTTGATGCGTTTCCGTAT
TCTGCTGATCAAACACTTCAGTTCGCTGTTCAAAAAGCTAGAAAGAAAAACAGCACCCTTGTTTATTTAAGTGCAACACC
TCCTCAAGAATTAAAAAGAAAAACACTGAATGGACAGTTATATTCAGTTCGTATTCCAGCAAGACACCATCGGAAACCTT
TGCCCGAACCGCGCTTTCTATGGTGTGGAAACTGGAAAAAGAAATTATACCGAAATAAAATCCCGCTAGCGGTAAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTGTTTGTTCCCTCCGTTACTGTTCTGGAAAAGGCAGTTGC
ATGCTTTAAAGATGTTAATTGCCGAGCAGCGGCAGTACATGCGGAAGATAAACACAGAAAAGAGAAAGTGCAGCAATTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTCACGATTCCCAAGGTGCAAACGGGTGTA
TTAGGGGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAGTCGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
AGACGGTGATGTCATTTTCTTTCACTACGGAAAAACAAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
CCTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

89.348

100

0.893

Multiple sequence alignment