Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GYO_RS40075 Genome accession   NC_016047
Coordinates   3600430..3601152 (-) Length   240 a.a.
NCBI ID   WP_014115351.1    Uniprot ID   G4P1D1
Organism   Bacillus spizizenii TU-B-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3595430..3606152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS40040 (GYO_3882) fliW 3595572..3596003 (-) 432 WP_014115344.1 flagellar assembly protein FliW -
  GYO_RS40045 (GYO_3883) - 3596024..3596599 (-) 576 WP_014115345.1 DUF6470 family protein -
  GYO_RS40050 (GYO_3884) flgL 3596647..3597543 (-) 897 WP_014115346.1 flagellar hook-associated protein FlgL -
  GYO_RS40055 (GYO_3885) flgK 3597553..3599076 (-) 1524 WP_014115347.1 flagellar hook-associated protein FlgK -
  GYO_RS40060 (GYO_3886) flgN 3599095..3599577 (-) 483 WP_014115348.1 flagellar protein FlgN -
  GYO_RS40065 (GYO_3887) flgM 3599592..3599858 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  GYO_RS40070 (GYO_3888) - 3599938..3600357 (-) 420 WP_014115350.1 TIGR03826 family flagellar region protein -
  GYO_RS40075 (GYO_3889) comFC 3600430..3601152 (-) 723 WP_014115351.1 ComF family protein Machinery gene
  GYO_RS40080 (GYO_3890) - 3601116..3601412 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  GYO_RS40085 (GYO_3891) comFA 3601481..3602863 (-) 1383 WP_080010142.1 ATP-dependent helicase ComFA Machinery gene
  GYO_RS40090 (GYO_3892) - 3602971..3603816 (-) 846 WP_014115354.1 DegV family protein -
  GYO_RS40095 (GYO_3893) degU 3603916..3604605 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GYO_RS40100 (GYO_3894) degS 3604688..3605845 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27345.83 Da        Isoelectric Point: 9.6427

>NTDB_id=42615 GYO_RS40075 WP_014115351.1 3600430..3601152(-) (comFC) [Bacillus spizizenii TU-B-10]
MPNEAGGGIYKLICLLCDSPFFQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCRDCEAWKSRVSD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSLVYPDKHFVLVPIPLSKEREKERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=42615 GYO_RS40075 WP_014115351.1 3600430..3601152(-) (comFC) [Bacillus spizizenii TU-B-10]
ATGCCAAATGAAGCAGGAGGGGGCATTTATAAACTGATCTGTCTATTATGCGATTCACCATTTTTTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAAGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATAACAGGACATA
TCTGCACCCTGTGCGGCAGGCCTCAATCCGTTCATGCGGTATGCAGGGATTGCGAGGCGTGGAAATCAAGAGTCAGTGAC
AGCTTGCTGTTGCGCCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTCTCACTGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTGAGCAAGGAACGGGAAAAAGAGCGCGGATTTAACCAGGCACAGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
AGCACGTATTTTTGATACAAAAAACAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.833

100

0.908

Multiple sequence alignment