Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G5S32_RS05140 | Genome accession | NZ_CP049331 |
| Coordinates | 1144758..1145279 (-) | Length | 173 a.a. |
| NCBI ID | WP_165310998.1 | Uniprot ID | A0A6G7CHA3 |
| Organism | Vibrio ziniensis strain ZWAL4003 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1143183..1191156 | 1144758..1145279 | within | 0 |
Gene organization within MGE regions
Location: 1143183..1191156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S32_RS05130 (G5S32_05130) | - | 1143183..1144430 (-) | 1248 | WP_165310994.1 | site-specific integrase | - |
| G5S32_RS05135 (G5S32_05135) | xisR | 1144442..1144681 (-) | 240 | WP_165310996.1 | excisionase family protein | - |
| G5S32_RS05140 (G5S32_05140) | ssb | 1144758..1145279 (-) | 522 | WP_165310998.1 | single-stranded DNA-binding protein | Machinery gene |
| G5S32_RS05145 (G5S32_05145) | - | 1145279..1145542 (-) | 264 | WP_165311000.1 | hypothetical protein | - |
| G5S32_RS05150 (G5S32_05150) | - | 1145621..1146211 (-) | 591 | WP_165311002.1 | 3'-5' exoribonuclease | - |
| G5S32_RS05155 (G5S32_05155) | - | 1146261..1147079 (-) | 819 | WP_165311004.1 | DUF2303 family protein | - |
| G5S32_RS05160 (G5S32_05160) | - | 1147120..1147518 (-) | 399 | WP_165311006.1 | hypothetical protein | - |
| G5S32_RS05165 (G5S32_05165) | - | 1147670..1148296 (-) | 627 | WP_165311008.1 | hypothetical protein | - |
| G5S32_RS05170 (G5S32_05170) | - | 1148331..1148654 (-) | 324 | WP_165311010.1 | hypothetical protein | - |
| G5S32_RS05175 (G5S32_05175) | - | 1148673..1149455 (-) | 783 | WP_165311012.1 | S24 family peptidase | - |
| G5S32_RS05180 (G5S32_05180) | - | 1149492..1149695 (+) | 204 | WP_165311014.1 | helix-turn-helix domain-containing protein | - |
| G5S32_RS05185 (G5S32_05185) | - | 1149751..1150224 (+) | 474 | WP_165311016.1 | YmfL family putative regulatory protein | - |
| G5S32_RS05190 (G5S32_05190) | - | 1150221..1150478 (+) | 258 | WP_165311018.1 | hypothetical protein | - |
| G5S32_RS05195 (G5S32_05195) | - | 1150478..1150639 (+) | 162 | WP_165311020.1 | hypothetical protein | - |
| G5S32_RS05200 (G5S32_05200) | - | 1150632..1151168 (+) | 537 | WP_165311022.1 | DNA methyltransferase | - |
| G5S32_RS05205 (G5S32_05205) | - | 1151153..1152118 (+) | 966 | WP_165311024.1 | helix-turn-helix domain-containing protein | - |
| G5S32_RS05210 (G5S32_05210) | - | 1152108..1152311 (+) | 204 | WP_165311026.1 | hypothetical protein | - |
| G5S32_RS05215 (G5S32_05215) | - | 1152314..1153012 (+) | 699 | WP_165311027.1 | phage regulatory protein/antirepressor Ant | - |
| G5S32_RS05220 (G5S32_05220) | - | 1152958..1154007 (+) | 1050 | WP_246201038.1 | DUF968 domain-containing protein | - |
| G5S32_RS21665 | - | 1154599..1155003 (+) | 405 | Protein_1000 | SIR2 family protein | - |
| G5S32_RS05230 (G5S32_05230) | - | 1155752..1155895 (+) | 144 | Protein_1001 | DUF3265 domain-containing protein | - |
| G5S32_RS05235 (G5S32_05235) | - | 1155904..1156554 (+) | 651 | WP_165311028.1 | zinc ribbon domain-containing protein | - |
| G5S32_RS05240 (G5S32_05240) | - | 1156876..1157943 (-) | 1068 | WP_165311029.1 | Abi family protein | - |
| G5S32_RS05245 (G5S32_05245) | - | 1158826..1160058 (+) | 1233 | WP_165311030.1 | DUF6161 domain-containing protein | - |
| G5S32_RS05250 (G5S32_05250) | - | 1160101..1160442 (+) | 342 | WP_165311031.1 | hypothetical protein | - |
| G5S32_RS05255 (G5S32_05255) | - | 1160598..1161431 (+) | 834 | WP_165311032.1 | GIY-YIG nuclease family protein | - |
| G5S32_RS05260 (G5S32_05260) | - | 1161564..1162031 (+) | 468 | WP_165311033.1 | Sbal_3080 family lipoprotein | - |
| G5S32_RS05265 (G5S32_05265) | - | 1162206..1162655 (+) | 450 | WP_165311034.1 | hypothetical protein | - |
| G5S32_RS05270 (G5S32_05270) | - | 1162721..1163110 (-) | 390 | WP_165311035.1 | hypothetical protein | - |
| G5S32_RS05275 (G5S32_05275) | - | 1163184..1163849 (+) | 666 | WP_165311036.1 | hypothetical protein | - |
| G5S32_RS05280 (G5S32_05280) | - | 1164005..1164211 (+) | 207 | WP_246201040.1 | phage holin family protein | - |
| G5S32_RS05285 (G5S32_05285) | - | 1164198..1164686 (+) | 489 | WP_165311038.1 | lysozyme | - |
| G5S32_RS05290 (G5S32_05290) | - | 1164659..1165147 (+) | 489 | WP_165311039.1 | lysis protein | - |
| G5S32_RS05295 (G5S32_05295) | - | 1165237..1165821 (+) | 585 | WP_165311040.1 | hypothetical protein | - |
| G5S32_RS05300 (G5S32_05300) | - | 1165730..1167688 (+) | 1959 | WP_165311041.1 | terminase gpA endonuclease subunit | - |
| G5S32_RS05305 (G5S32_05305) | gpW | 1167688..1167897 (+) | 210 | WP_207621600.1 | gpW family head-tail joining protein | - |
| G5S32_RS05310 (G5S32_05310) | - | 1167897..1169456 (+) | 1560 | WP_165311043.1 | phage portal protein | - |
| G5S32_RS05315 (G5S32_05315) | - | 1169449..1170792 (+) | 1344 | WP_165311044.1 | S49 family peptidase | - |
| G5S32_RS05320 (G5S32_05320) | - | 1170803..1171141 (+) | 339 | WP_165311045.1 | head decoration protein | - |
| G5S32_RS05325 (G5S32_05325) | - | 1171180..1172220 (+) | 1041 | WP_165311046.1 | major capsid protein | - |
| G5S32_RS05330 (G5S32_05330) | - | 1172287..1172802 (+) | 516 | WP_165311047.1 | hypothetical protein | - |
| G5S32_RS05335 (G5S32_05335) | - | 1172835..1173098 (+) | 264 | WP_246201041.1 | head-tail joining protein | - |
| G5S32_RS05340 (G5S32_05340) | - | 1173095..1173724 (+) | 630 | WP_165311049.1 | phage tail protein | - |
| G5S32_RS05345 (G5S32_05345) | gpU | 1173714..1174163 (+) | 450 | WP_165311050.1 | phage tail terminator protein | - |
| G5S32_RS05350 (G5S32_05350) | - | 1174166..1174678 (+) | 513 | WP_165311051.1 | phage tail tube protein | - |
| G5S32_RS05355 (G5S32_05355) | - | 1174681..1175124 (+) | 444 | WP_165311052.1 | phage minor tail protein G | - |
| G5S32_RS05360 (G5S32_05360) | - | 1175193..1175471 (+) | 279 | WP_246201043.1 | phage tail assembly protein T | - |
| G5S32_RS05365 (G5S32_05365) | - | 1175452..1177635 (+) | 2184 | WP_165311053.1 | hypothetical protein | - |
| G5S32_RS05370 (G5S32_05370) | - | 1177637..1178230 (+) | 594 | WP_165311054.1 | hypothetical protein | - |
| G5S32_RS05375 (G5S32_05375) | - | 1178227..1178781 (+) | 555 | WP_165311055.1 | DUF2163 domain-containing protein | - |
| G5S32_RS21465 | - | 1178785..1183716 (+) | 4932 | WP_207621601.1 | hypothetical protein | - |
| G5S32_RS05385 (G5S32_05385) | - | 1183762..1186950 (+) | 3189 | WP_165311056.1 | hypothetical protein | - |
| G5S32_RS05390 (G5S32_05390) | tnpA | 1187129..1187590 (+) | 462 | WP_165311057.1 | IS200/IS605 family transposase | - |
| G5S32_RS05395 (G5S32_05395) | - | 1187711..1188463 (+) | 753 | WP_165311058.1 | DUF4376 domain-containing protein | - |
| G5S32_RS05400 (G5S32_05400) | - | 1188773..1190392 (+) | 1620 | WP_165311059.1 | trypsin-like serine protease | - |
| G5S32_RS05405 (G5S32_05405) | - | 1190560..1191156 (-) | 597 | WP_165311060.1 | Fic family protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19258.60 Da Isoelectric Point: 7.4195
>NTDB_id=426157 G5S32_RS05140 WP_165310998.1 1144758..1145279(-) (ssb) [Vibrio ziniensis strain ZWAL4003]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKSSGQQREKTEWHRVTLYGKLAEVAGEHLRKGSQVYI
EGQLQTRKWQDQSGQDRFSTEVVVQGYNGVMQMLGSKRDQGWGQSQQPISSLGNQSPHHAPPPPQYNEPPMDFDDDIPLV
PMFKPHRSLSLCV
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKSSGQQREKTEWHRVTLYGKLAEVAGEHLRKGSQVYI
EGQLQTRKWQDQSGQDRFSTEVVVQGYNGVMQMLGSKRDQGWGQSQQPISSLGNQSPHHAPPPPQYNEPPMDFDDDIPLV
PMFKPHRSLSLCV
Nucleotide
Download Length: 522 bp
>NTDB_id=426157 G5S32_RS05140 WP_165310998.1 1144758..1145279(-) (ssb) [Vibrio ziniensis strain ZWAL4003]
ATGGCTAGCCGTGGAGTAAACAAAGTCATCCTAGTAGGAAACTTAGGCAGTGATCCAGAGGTGCGTTATATGCCTTCTGG
TGGAGCTGTTGCCAACATCACTATAGCCACCAGCGAAACGTGGCGAGATAAATCGTCAGGTCAGCAACGCGAAAAAACAG
AGTGGCACCGAGTAACCCTGTACGGAAAGCTTGCTGAAGTCGCTGGTGAACACTTAAGAAAAGGTTCGCAAGTCTACATC
GAAGGTCAGCTACAAACTCGTAAATGGCAGGACCAATCAGGACAAGATCGATTTTCAACAGAGGTTGTAGTTCAGGGATA
CAACGGAGTGATGCAAATGCTAGGTAGTAAACGCGACCAAGGATGGGGGCAATCTCAACAACCAATTAGTAGTCTGGGAA
ATCAATCGCCACACCATGCACCACCGCCGCCTCAATATAATGAACCACCTATGGATTTCGATGATGATATCCCTCTGGTT
CCAATGTTTAAACCGCATCGCTCACTTAGTCTGTGCGTTTAA
ATGGCTAGCCGTGGAGTAAACAAAGTCATCCTAGTAGGAAACTTAGGCAGTGATCCAGAGGTGCGTTATATGCCTTCTGG
TGGAGCTGTTGCCAACATCACTATAGCCACCAGCGAAACGTGGCGAGATAAATCGTCAGGTCAGCAACGCGAAAAAACAG
AGTGGCACCGAGTAACCCTGTACGGAAAGCTTGCTGAAGTCGCTGGTGAACACTTAAGAAAAGGTTCGCAAGTCTACATC
GAAGGTCAGCTACAAACTCGTAAATGGCAGGACCAATCAGGACAAGATCGATTTTCAACAGAGGTTGTAGTTCAGGGATA
CAACGGAGTGATGCAAATGCTAGGTAGTAAACGCGACCAAGGATGGGGGCAATCTCAACAACCAATTAGTAGTCTGGGAA
ATCAATCGCCACACCATGCACCACCGCCGCCTCAATATAATGAACCACCTATGGATTTCGATGATGATATCCCTCTGGTT
CCAATGTTTAAACCGCATCGCTCACTTAGTCTGTGCGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.011 |
100 |
0.757 |
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.526 |
| ssb | Neisseria gonorrhoeae MS11 |
44.633 |
100 |
0.457 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.451 |