Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   G5S32_RS05095 Genome accession   NZ_CP049331
Coordinates   1134184..1134774 (+) Length   196 a.a.
NCBI ID   WP_165310981.1    Uniprot ID   A0A6G7CH22
Organism   Vibrio ziniensis strain ZWAL4003     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129184..1139774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS05075 (G5S32_05075) panP 1129547..1131193 (-) 1647 WP_165310973.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  G5S32_RS05080 (G5S32_05080) - 1131321..1131833 (-) 513 WP_165310975.1 hypothetical protein -
  G5S32_RS05085 (G5S32_05085) - 1131966..1132871 (-) 906 WP_165310977.1 lysine exporter LysO family protein -
  G5S32_RS05090 (G5S32_05090) - 1132890..1133810 (-) 921 WP_165310979.1 HDOD domain-containing protein -
  G5S32_RS05095 (G5S32_05095) tfoX 1134184..1134774 (+) 591 WP_165310981.1 TfoX/Sxy family DNA transformation protein Regulator
  G5S32_RS05100 (G5S32_05100) - 1134847..1135389 (-) 543 WP_165310983.1 hypothetical protein -
  G5S32_RS05105 (G5S32_05105) - 1135581..1136078 (-) 498 WP_165310985.1 response regulator -
  G5S32_RS05110 (G5S32_05110) - 1136089..1138029 (-) 1941 WP_165310987.1 ATP-binding protein -
  G5S32_RS05115 (G5S32_05115) - 1138241..1139506 (+) 1266 WP_165310989.1 DUF945 family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22707.03 Da        Isoelectric Point: 8.0088

>NTDB_id=426156 G5S32_RS05095 WP_165310981.1 1134184..1134774(+) (tfoX) [Vibrio ziniensis strain ZWAL4003]
MVEQTFFDYVNKFGESQQRSMFGGIGLFQEDAMYALLTNDCIYIRGGEELDDQLTSLGCEKFRHVKKQTVATVNYYEITD
LFDNRYEGLEAIISTSIKNAVFQRVDQKSSSNRRLRDLPNMQLTLERMVKKSGVCDVDTFMKLGASVVFNKVCQTYGNDI
DIKLLWKFAGAIEGIHWKLLQEPRKRQLLESCRRRT

Nucleotide


Download         Length: 591 bp        

>NTDB_id=426156 G5S32_RS05095 WP_165310981.1 1134184..1134774(+) (tfoX) [Vibrio ziniensis strain ZWAL4003]
ATGGTAGAACAAACATTTTTCGATTACGTAAATAAGTTTGGCGAGAGTCAACAGCGTTCAATGTTTGGTGGTATAGGTTT
ATTTCAAGAGGATGCTATGTATGCTCTATTAACTAACGATTGCATATATATCAGAGGTGGAGAGGAGCTAGATGATCAGT
TAACTTCATTGGGTTGCGAAAAGTTCCGTCATGTAAAGAAACAGACTGTAGCAACGGTTAACTACTATGAGATTACGGAC
TTATTCGATAATCGTTATGAAGGGTTAGAGGCTATTATTAGCACTTCAATAAAAAACGCAGTTTTTCAACGCGTAGATCA
GAAGTCTTCATCAAATCGTCGTTTGCGTGATTTACCAAATATGCAGTTAACTCTGGAAAGAATGGTAAAGAAATCTGGTG
TATGTGATGTAGATACTTTTATGAAACTAGGCGCTTCTGTTGTGTTTAACAAAGTTTGCCAAACGTACGGGAACGATATT
GATATTAAGTTGCTATGGAAGTTTGCGGGAGCTATTGAAGGTATACACTGGAAGTTATTGCAAGAACCTCGTAAACGCCA
GCTTTTAGAAAGTTGCCGCCGTCGAACTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-99)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CH22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.769

99.49

0.704
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.769

99.49

0.704
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.769

99.49

0.704
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.769

99.49

0.704
  tfoX Vibrio cholerae strain A1552

70.769

99.49

0.704
  tfoX Vibrio campbellii strain DS40M4

64.583

97.959

0.633
  tfoX Vibrio parahaemolyticus RIMD 2210633

63.542

97.959

0.622
  tfoX Aliivibrio fischeri ES114

56.545

97.449

0.551