Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GYO_RS34555 | Genome accession | NC_016047 |
| Coordinates | 2533319..2533654 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus spizizenii TU-B-10 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2528319..2538654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS34535 (GYO_2717) | gcvT | 2528905..2529993 (-) | 1089 | WP_014114387.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GYO_RS34540 (GYO_2718) | - | 2530438..2532111 (+) | 1674 | WP_014114388.1 | DEAD/DEAH box helicase | - |
| GYO_RS34545 (GYO_2719) | - | 2532132..2532926 (+) | 795 | WP_014114389.1 | YqhG family protein | - |
| GYO_RS34550 (GYO_2720) | sinI | 2533112..2533285 (+) | 174 | WP_003226347.1 | anti-repressor SinI | Regulator |
| GYO_RS34555 (GYO_2721) | sinR | 2533319..2533654 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| GYO_RS34560 (GYO_2722) | tasA | 2533748..2534533 (-) | 786 | WP_014114390.1 | biofilm matrix protein TasA | - |
| GYO_RS34565 (GYO_2723) | sipW | 2534597..2535169 (-) | 573 | WP_014114391.1 | signal peptidase I SipW | - |
| GYO_RS34570 (GYO_2724) | tapA | 2535153..2535914 (-) | 762 | WP_014114392.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GYO_RS34575 (GYO_2725) | - | 2536185..2536511 (+) | 327 | WP_014114393.1 | YqzG/YhdC family protein | - |
| GYO_RS34580 (GYO_2726) | - | 2536553..2536732 (-) | 180 | WP_003226330.1 | YqzE family protein | - |
| GYO_RS34585 (GYO_2727) | comGG | 2536804..2537178 (-) | 375 | WP_014114394.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GYO_RS34590 | comGF | 2537179..2537562 (-) | 384 | WP_041520999.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GYO_RS34595 (GYO_2731) | comGE | 2537588..2537935 (-) | 348 | WP_014114398.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GYO_RS34600 (GYO_2732) | comGD | 2537919..2538350 (-) | 432 | WP_014114399.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GYO_RS34605 (GYO_2733) | comGC | 2538340..2538636 (-) | 297 | WP_014114400.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=42589 GYO_RS34555 WP_003226345.1 2533319..2533654(+) (sinR) [Bacillus spizizenii TU-B-10]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=42589 GYO_RS34555 WP_003226345.1 2533319..2533654(+) (sinR) [Bacillus spizizenii TU-B-10]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |