Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G5S54_RS00970 | Genome accession | NZ_CP049285 |
| Coordinates | 208886..209422 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Shigella boydii strain 602068 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 190176..213981 | 208886..209422 | within | 0 |
| IScluster/Tn | 209523..214495 | 208886..209422 | flank | 101 |
Gene organization within MGE regions
Location: 190176..214495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S54_RS00880 (G5S54_00880) | - | 190176..191161 (-) | 986 | Protein_165 | DUF2713 domain-containing protein | - |
| G5S54_RS00885 (G5S54_00885) | zur | 191479..191994 (+) | 516 | WP_004988057.1 | zinc uptake transcriptional repressor Zur | - |
| G5S54_RS00890 (G5S54_00890) | - | 192036..192245 (-) | 210 | WP_001030593.1 | CsbD family protein | - |
| G5S54_RS00895 (G5S54_00895) | dinF | 192361..193686 (-) | 1326 | WP_001308275.1 | MATE family efflux transporter DinF | - |
| G5S54_RS00900 (G5S54_00900) | lexA | 193759..194367 (-) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| G5S54_RS00905 (G5S54_00905) | dgkA | 194477..194845 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| G5S54_RS00910 (G5S54_00910) | plsB | 195016..197439 (+) | 2424 | WP_004988121.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| G5S54_RS00915 (G5S54_00915) | ubiA | 197594..198466 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| G5S54_RS00920 (G5S54_00920) | ubiC | 198479..198976 (-) | 498 | WP_001295693.1 | chorismate lyase | - |
| G5S54_RS00925 (G5S54_00925) | - | 199199..199405 (-) | 207 | Protein_174 | hypothetical protein | - |
| G5S54_RS00930 (G5S54_00930) | - | 199520..200647 (+) | 1128 | WP_001063816.1 | IS110-like element ISSso6 family transposase | - |
| G5S54_RS00935 (G5S54_00935) | - | 200914..202298 (-) | 1385 | Protein_176 | SopA family protein | - |
| G5S54_RS00940 (G5S54_00940) | - | 202498..203195 (+) | 698 | WP_094106546.1 | IS1 family transposase | - |
| G5S54_RS00945 (G5S54_00945) | - | 203552..203774 (-) | 223 | Protein_178 | hypothetical protein | - |
| G5S54_RS00950 (G5S54_00950) | aphA | 204175..204888 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| G5S54_RS00955 (G5S54_00955) | - | 204999..205415 (+) | 417 | WP_000270377.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| G5S54_RS00960 (G5S54_00960) | - | 205419..205775 (+) | 357 | WP_000155649.1 | MmcQ/YjbR family DNA-binding protein | - |
| G5S54_RS00965 (G5S54_00965) | uvrA | 205810..208632 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| G5S54_RS00970 (G5S54_00970) | ssb | 208886..209422 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| G5S54_RS00975 (G5S54_00975) | - | 209523..210839 (-) | 1317 | WP_135186281.1 | IS4-like element IS4 family transposase | - |
| G5S54_RS25020 | - | 212131..212205 (-) | 75 | Protein_186 | hypothetical protein | - |
| G5S54_RS00985 (G5S54_00985) | - | 212296..212577 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| G5S54_RS00990 (G5S54_00990) | pdeC | 213007..213741 (+) | 735 | Protein_188 | c-di-GMP phosphodiesterase PdeC | - |
| G5S54_RS00995 (G5S54_00995) | - | 213798..214495 (+) | 698 | WP_094106546.1 | IS1 family transposase | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=425868 G5S54_RS00970 WP_000168305.1 208886..209422(+) (ssb) [Shigella boydii strain 602068]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=425868 G5S54_RS00970 WP_000168305.1 208886..209422(+) (ssb) [Shigella boydii strain 602068]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |