Detailed information NTG0425504

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: IF775_RS01795
• Genome accession: NZ_CP062318
• Coordinates: 332425..333111 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NAS_OP_132
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 327425..338111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF775_RS01780 (IF775_01770)	-	327531..330161 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
IF775_RS01785 (IF775_01775)	-	330174..331445 (+)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
IF775_RS01790 (IF775_01780)	-	331721..332428 (+)	708	WP_000261108.1	A24 family peptidase	-
IF775_RS01795 (IF775_01785)	ysxA/radC	332425..333111 (+)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
IF775_RS01800 (IF775_01790)	-	333179..333463 (+)	285	WP_061653173.1	hypothetical protein	-
IF775_RS01805 (IF775_01795)	-	333580..333777 (-)	198	WP_072467374.1	hypothetical protein	-
IF775_RS01810 (IF775_01800)	-	333937..334410 (+)	474	WP_001236734.1	DUF4930 family protein	-
IF775_RS01815 (IF775_01805)	-	334484..334603 (+)	120	WP_000840602.1	hypothetical protein	-
IF775_RS01820 (IF775_01810)	mreC	334802..335644 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IF775_RS01825 (IF775_01815)	mreD	335644..336174 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
IF775_RS01830 (IF775_01820)	rplU	336467..336775 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IF775_RS01835 (IF775_01825)	-	336781..337101 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IF775_RS01840 (IF775_01830)	rpmA	337113..337397 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=425504 IF775_RS01795 WP_000692886.1 332425..333111(+) (ysxA/radC) [Staphylococcus aureus strain NAS_OP_132]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=425504 IF775_RS01795 WP_000692886.1 332425..333111(+) (ysxA/radC) [Staphylococcus aureus strain NAS_OP_132]
TTGAAAATTAAAGAAATGGTAACTTCGGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACTACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTTGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377