Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6M88_RS00440 Genome accession   NZ_CP049206
Coordinates   95466..95987 (+) Length   173 a.a.
NCBI ID   WP_065701213.1    Uniprot ID   A0AAE7R4T9
Organism   Agrobacterium rubi strain W2/73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 90466..100987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M88_RS00430 (G6M88_00430) - 91428..92228 (-) 801 WP_065701066.1 DUF72 domain-containing protein -
  G6M88_RS00435 (G6M88_00435) uvrA 92251..95172 (-) 2922 WP_065701065.1 excinuclease ABC subunit UvrA -
  G6M88_RS00440 (G6M88_00440) ssb 95466..95987 (+) 522 WP_065701213.1 single-stranded DNA-binding protein Machinery gene
  G6M88_RS00445 (G6M88_00445) - 96014..96271 (+) 258 WP_065701064.1 hypothetical protein -
  G6M88_RS00450 (G6M88_00450) - 96383..97321 (-) 939 WP_141680779.1 tetratricopeptide repeat protein -
  G6M88_RS00455 (G6M88_00455) - 97368..97997 (-) 630 WP_065701062.1 MarC family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18520.22 Da        Isoelectric Point: 5.3175

>NTDB_id=425488 G6M88_RS00440 WP_065701213.1 95466..95987(+) (ssb) [Agrobacterium rubi strain W2/73]
MAGSVNKVILLGNVGADPEIRRTQDGRPIANLRIATSESWRDRTSGERKEKTEWHSVVVFNEGLCKVIEQYVKKGAKLYI
EGALQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGESGGGGSRGGDDFGGGGGNYGGSNDQPSSSSRGGASRGGQPA
GNFNNDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=425488 G6M88_RS00440 WP_065701213.1 95466..95987(+) (ssb) [Agrobacterium rubi strain W2/73]
ATGGCTGGCAGCGTAAACAAGGTAATTTTGCTCGGAAACGTCGGCGCTGATCCGGAAATTCGCCGCACGCAGGACGGTCG
CCCCATTGCAAATCTTCGTATCGCGACATCGGAAAGCTGGCGTGACCGCACATCCGGTGAGCGTAAAGAAAAGACCGAAT
GGCACTCTGTCGTGGTCTTCAACGAAGGTCTCTGCAAGGTCATCGAGCAGTACGTGAAAAAGGGTGCCAAGCTCTATATC
GAAGGCGCGCTTCAGACCCGCAAGTGGCAGGACCAGACCGGCAACGACCGTTACTCCACGGAAATCGTTCTCCAAGGCTT
CAACTCGACGCTGACCATGTTGGACGGCCGTGGTGAAAGCGGCGGCGGTGGAAGCCGTGGCGGAGACGATTTCGGTGGCG
GCGGCGGAAACTACGGCGGCAGCAACGACCAGCCATCGTCCTCGTCGCGCGGTGGCGCATCCCGCGGCGGCCAGCCAGCC
GGTAACTTCAACAACGATATGGACGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.143

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.211

100

0.486
  ssb Neisseria meningitidis MC58

37.5

100

0.399
  ssb Neisseria gonorrhoeae MS11

36.957

100

0.393