Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPPC18_RS08415 | Genome accession | NC_017742 |
| Coordinates | 394152..395162 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664505.1 | Uniprot ID | - |
| Organism | Helicobacter pylori PeCan18 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 389152..400162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPC18_RS01885 (HPPC18_01895) | - | 389244..389618 (-) | 375 | WP_000772146.1 | chemotaxis response regulator CheY | - |
| HPPC18_RS01890 (HPPC18_01900) | - | 389865..390509 (+) | 645 | WP_041200932.1 | outer membrane protein | - |
| HPPC18_RS01900 (HPPC18_01905) | - | 390655..391062 (-) | 408 | WP_000906112.1 | hypothetical protein | - |
| HPPC18_RS01905 (HPPC18_01910) | - | 391065..391295 (-) | 231 | WP_000944410.1 | PP0621 family protein | - |
| HPPC18_RS01910 (HPPC18_01915) | rsmG | 391289..391825 (-) | 537 | WP_001068864.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPPC18_RS01915 (HPPC18_01920) | queA | 391822..392859 (-) | 1038 | WP_000657367.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPPC18_RS01920 (HPPC18_01925) | tatC | 392860..393609 (-) | 750 | WP_000461189.1 | twin-arginine translocase subunit TatC | - |
| HPPC18_RS01925 (HPPC18_01930) | tatB | 393602..394084 (-) | 483 | WP_000467514.1 | Sec-independent protein translocase protein TatB | - |
| HPPC18_RS08415 (HPPC18_01935) | ruvB | 394152..395162 (-) | 1011 | WP_000664505.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPPC18_RS08420 (HPPC18_01940) | panB | 395163..395975 (-) | 813 | WP_000062655.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPPC18_RS01940 (HPPC18_01945) | - | 396123..396845 (+) | 723 | WP_000523326.1 | hypothetical protein | - |
| HPPC18_RS01945 (HPPC18_01950) | - | 396835..397692 (+) | 858 | WP_001890775.1 | outer membrane beta-barrel protein | - |
| HPPC18_RS01950 (HPPC18_01955) | - | 397704..398645 (+) | 942 | WP_000770196.1 | outer membrane beta-barrel protein | - |
| HPPC18_RS01955 (HPPC18_01960) | - | 398655..399977 (+) | 1323 | WP_000522731.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37407.43 Da Isoelectric Point: 6.0715
>NTDB_id=42548 HPPC18_RS08415 WP_000664505.1 394152..395162(-) (ruvB) [Helicobacter pylori PeCan18]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKVAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTTKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKVAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTTKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=42548 HPPC18_RS08415 WP_000664505.1 394152..395162(-) (ruvB) [Helicobacter pylori PeCan18]
ATGAAAGAACGGATAGTCAATTTAGAAACCTTAGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAGAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAACTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
TTCCCTCATCATCAAAAAAGTCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTAGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAGGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGGGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCACTAAAGGTAGGATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACCTTAGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAGAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAACTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
TTCCCTCATCATCAAAAAAGTCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTAGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAGGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGGGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCACTAAAGGTAGGATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.024 |
100 |
0.97 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.251 |
96.131 |
0.512 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |