NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	IF782_RS01840	Genome accession	NZ_CP062312
Coordinates	343723..344409 (+)	Length	228 a.a.
NCBI ID	WP_000692870.1	Uniprot ID	Q8NW77
Organism	Staphylococcus aureus strain NAS_OP_163
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 338723..349409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF782_RS01825 (IF782_01835)	-	338835..341465 (+)	2631	WP_000425352.1	valine--tRNA ligase	-
IF782_RS01830 (IF782_01840)	-	341478..342749 (+)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
IF782_RS01835 (IF782_01845)	-	343019..343726 (+)	708	WP_000261115.1	A24 family peptidase	-
IF782_RS01840 (IF782_01850)	ysxA/radC	343723..344409 (+)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
IF782_RS01845 (IF782_01855)	-	344477..344761 (+)	285	WP_000171859.1	hypothetical protein	-
IF782_RS01850 (IF782_01860)	-	344878..345075 (-)	198	WP_000025835.1	hypothetical protein	-
IF782_RS01855 (IF782_01865)	-	345235..345708 (+)	474	WP_001236734.1	DUF4930 family protein	-
IF782_RS01860 (IF782_01870)	-	345782..345901 (+)	120	WP_000840602.1	hypothetical protein	-
IF782_RS01865 (IF782_01875)	mreC	346101..346943 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IF782_RS01870 (IF782_01880)	mreD	346943..347473 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
IF782_RS01875 (IF782_01885)	rplU	347766..348074 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IF782_RS01880 (IF782_01890)	-	348080..348400 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IF782_RS01885 (IF782_01895)	rpmA	348412..348696 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.28 Da Isoelectric Point: 7.0539

                                >NTDB_id=425329 IF782_RS01840 WP_000692870.1 343723..344409(+) (ysxA/radC) [Staphylococcus aureus strain NAS_OP_163]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=425329 IF782_RS01840 WP_000692870.1 343723..344409(+) (ysxA/radC) [Staphylococcus aureus strain NAS_OP_163]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q8NW77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0425329